Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1568 ATGTCGAAAAGAGATGATCGTAACAACTCCGGCATGTCTGGGAGCTTTCAGAACGACTCTTATGTAGTTGACATGCCGACTTCATCGGCTCCGGCTAGAAATAATCAAATACTCTTCACCAAGGTGGACCAGAAAGAGCTGATTGATATGGTGAAGAGTAAAAACAAAGTAGCTCTTCATGACCTTGGAGGAGCTGCAACCATTGCTACTTCTCTTGGATCGGATCCAGAGAATGGAATCGATGGATATGAAGTGAACAAGCGACGCGAAATATTCGGTTCAAACACTTACTGCAAGCGAACCCAGAAGGGTTTCTTTCACTTTCTACTGAACGATCTCAAGGCCAACAGTATCATCTTCATTTTCGCACTTTTGCTTGCGAGTTATTTTCTGCCTGGGAGAGGAGAACCTGGAGCTAAACACCCATGGAGGGAAGGATTGGTGATGTTATGTATTACTCTGTCGGTTTCTGTTGTGTCAGCAACCTGTGCCGTCCGAAAGGAGGTTCGATTCCAGCAGTTCATGAAAAGAGGAAACGACTTCAAAGTGGAGGTAATGAGAGATGGAAGGCGCATACAAGTTTCCATCTTCGATATCGTGGTTGGAGATGTCGTGATTCTAAAGCTTGGAGTCCAAATTCCAGCTGATGGGTTGTTCTTAAGTGGTCATTTTTTACAGGTGGATGAGTCAAGCATGACAAGAGAGAGCGATTGTGTGGAACTCAATTCTACAGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTAGTAGATGGCTATGGTCAAATGCTGGTGACATCAGTGGGAATGGACACAGCATGGGGCGAGATGATGAGCTCGATATCTCGGGATTCTGTGGAACAAACACCATTGCAAGTTCATCTTGACAAATTAAACACTTCTATAGGAAAGGTAGGCTTCCTTGCTGCCTTCCTGATCCTTGTTGTCATGTTAGTACGCTATTTTACGAGGAATACGACGGATGATATTGTGAACACAGAGTACAATGGTCGAAAAACGGGGGTACACTCTGTGTTCAATTCAGTTATCCGTATAGTAGCTGTTGCAGTTACCCGTATAGTTTCGGCTGCGGTTACCATAGCAGTGGTTGCAATCTCTGAACGCTTCCCATTGGCTGTGACACTAATACTTGCTTACACTATTAAGAGAATGAAAAAACAGACAATGGTGAGGAAACTGTCTGCTTGTGTAACAATGGGATCAGCAACTGTGCTTTGCACTGACAAAACAGGTACTTTGACATCAAACCAAATGAAAGTAACCAAATTTTGGCTTGGCCAAGAGTTCAATGAGGCAGAAACCTCTTCCCATACCATACCAGAGACTGTTCATGAGTTGATAAATCAAGGAGTTGGCTTGAACACATCTGGTAGTGTCTATCAACCTTCACCAAAATCCAAAACTGAAATCTCTGGTAGTCCAACTGAGAAGGCGATTCTCTCTTGGGCAGTCACGGAATTTGGTATGGACATGGTTAAGTTGGAGAAATCATATGCTATTCTGCATGTGGAAACCTTCAACTCCGAGAAGAAAAGAAGTGGAGTTTTGGTGAAAAAATTGGCCGATAACACAATCCATCAGCATTGGAAAGGAGCTGCTGAGATGATACTGTCAATGTGTTCAAGTTACTTTGAAAGAAATGGCGAAACATATCCCTTAGATAGCGAAAGCCGAACAAAAATTGAAAACATAATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAGACAAATCTCAGAAGAAGAGGAAAAAAATAGCATACCAATTTCCTCAAACTTGAAAGAAGATGGATTTACATTAATGGGAATAGTTGGCATCAAAGATCCATGTAAACCAGGGGTTAAGGAAGTTGTGGAAACATGTAAATCAGCTGGAGTTTCCGTTAAAATGATCACAGGAGACAACATTTTCACAGCAAAAACTATAGCCACTGAATGTGGAATATTAGATCTTGACCACAAAACAGCAAGCAGAGGAGAAGTAATAGAAGGTTTCGAATTCCGAAACTACTCAAATGAAGAGAGACTGCAGAGGGTTGATCAAATCAAGGTGATGGCAAGATCCTCTCCATTTGACAAGCTCTTGATGGTTCAATGTTTGAAACAGAAAGGCCATGTCGTAGCAGTAACCGGAGACGGTACAAATGACGCACCGGCTCTAAAAGAAGGTGACATAGGACTTTCAATGGGCATTGGAGGCACTGAGTTTGCAAGAGAGAGTTCAGACATTGTTATCTTGGATGATAACTTCACCACAGTAGCCACAGTCTTGAGGTGGGGAAGATGTGTATACAACAACATCCAAAAATTCATCCAATTTCAATTGACAGTCAATATAGTAGCTCTCACAATTAACTTTATAGCAGCAGTATCAGCTGGAGAAGTTCCCTTAACAGCGGTCCAATTATTATGGGTGAATCTCATAATGGATACATTGGCTGCTCTTGCTCTTGCTACTGAGAGACCAAATGATGAATTGATGCGCAAGCCTCCAGTCGGAAGAACAGAGCCCCTAATAACAAATGTCATGTGGAGGAACCTTTTAGCTCAAGCATTGTACCAAATAACAGTACTCTTGATTTTCCAGTTCCAAGGAAGCAACATCTTCAAAGTAAGTGAGAGGGTAAATGATACTCTAATCTTCAACACTTTTGTTCTCTGCCAAATCTTCAATGAGTTCAACTCGAGGAAACTAGTTAAACAGAATGTCTTTGAAGGCATTCTAAAGGATCATTTATTTCTTGGAATTGTGGGGGTAACATTTGTTCTACAAGTTGTTATGGTTGAATTCCTAAACAAGTTTGCAGATACAACGAATCTAAATGGTTGGCAATGGGGGCTTTGCATTGCTATTCCAGCTTTGTCTTGGCCAATTGGTTGGATTGTCAACTTCTTGCCTGTTTCTGATAGGCCTTTCTGA 2952 41.8 MSKRDDRNNSGMSGSFQNDSYVVDMPTSSAPARNNQILFTKVDQKELIDMVKSKNKVALHDLGGAATIATSLGSDPENGIDGYEVNKRREIFGSNTYCKRTQKGFFHFLLNDLKANSIIFIFALLLASYFLPGRGEPGAKHPWREGLVMLCITLSVSVVSATCAVRKEVRFQQFMKRGNDFKVEVMRDGRRIQVSIFDIVVGDVVILKLGVQIPADGLFLSGHFLQVDESSMTRESDCVELNSTENPFLLSGTKVVDGYGQMLVTSVGMDTAWGEMMSSISRDSVEQTPLQVHLDKLNTSIGKVGFLAAFLILVVMLVRYFTRNTTDDIVNTEYNGRKTGVHSVFNSVIRIVAVAVTRIVSAAVTIAVVAISERFPLAVTLILAYTIKRMKKQTMVRKLSACVTMGSATVLCTDKTGTLTSNQMKVTKFWLGQEFNEAETSSHTIPETVHELINQGVGLNTSGSVYQPSPKSKTEISGSPTEKAILSWAVTEFGMDMVKLEKSYAILHVETFNSEKKRSGVLVKKLADNTIHQHWKGAAEMILSMCSSYFERNGETYPLDSESRTKIENIIQGMAASSLRCIAFAYRQISEEEEKNSIPISSNLKEDGFTLMGIVGIKDPCKPGVKEVVETCKSAGVSVKMITGDNIFTAKTIATECGILDLDHKTASRGEVIEGFEFRNYSNEERLQRVDQIKVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEGDIGLSMGIGGTEFARESSDIVILDDNFTTVATVLRWGRCVYNNIQKFIQFQLTVNIVALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLAALALATERPNDELMRKPPVGRTEPLITNVMWRNLLAQALYQITVLLIFQFQGSNIFKVSERVNDTLIFNTFVLCQIFNEFNSRKLVKQNVFEGILKDHLFLGIVGVTFVLQVVMVEFLNKFADTTNLNGWQWGLCIAIPALSWPIGWIVNFLPVSDRPF 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42739283 42742677 + Maker00014691 Lcy3g1568 628760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1568 983 Pfam Cation transport ATPase (P-type) 464 549 - -
Lcy3g1568 983 Pfam Cation transporting ATPase, C-terminus 806 975 IPR006068 -
Lcy3g1568 983 PRINTS P-type cation-transporting ATPase superfamily signature 721 740 - -
Lcy3g1568 983 PRINTS P-type cation-transporting ATPase superfamily signature 635 645 - -
Lcy3g1568 983 PRINTS P-type cation-transporting ATPase superfamily signature 745 757 - -
Lcy3g1568 983 PRINTS P-type cation-transporting ATPase superfamily signature 228 242 - -
Lcy3g1568 983 PRINTS P-type cation-transporting ATPase superfamily signature 613 624 - -
Lcy3g1568 983 PRINTS P-type cation-transporting ATPase superfamily signature 412 426 - -
Lcy3g1568 983 MobiDBLite consensus disorder prediction 7 28 - -
Lcy3g1568 983 SUPERFAMILY HAD-like 410 826 IPR036412 -
Lcy3g1568 983 Pfam Cation transporter/ATPase, N-terminus 63 122 IPR004014 -
Lcy3g1568 983 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 419 617 IPR023299 GO:0000166(InterPro)
Lcy3g1568 983 Gene3D - 79 281 - -
Lcy3g1568 983 Pfam E1-E2 ATPase 182 393 - -
Lcy3g1568 983 SFLD Haloacid Dehalogenase 395 774 - -
Lcy3g1568 983 PRINTS H+-transporting ATPase (proton pump) signature 721 737 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy3g1568 983 PRINTS H+-transporting ATPase (proton pump) signature 567 585 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy3g1568 983 PRINTS H+-transporting ATPase (proton pump) signature 753 778 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy3g1568 983 SUPERFAMILY Calcium ATPase, transduction domain A 181 279 IPR008250 -
Lcy3g1568 983 FunFam Calcium-transporting ATPase 738 980 - -
Lcy3g1568 983 Gene3D - 409 766 IPR023214 -
Lcy3g1568 983 Gene3D - 111 965 - -
Lcy3g1568 983 FunFam Plasma membrane calcium-transporting ATPase 2 618 766 - -
Lcy3g1568 983 Gene3D - 422 620 IPR023299 GO:0000166(InterPro)
Lcy3g1568 983 NCBIfam HAD-IC family P-type ATPase 692 801 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy3g1568 983 SUPERFAMILY Calcium ATPase, transmembrane domain M 65 978 IPR023298 -
Lcy3g1568 983 PANTHER CATION TRANSPORTING ATPASE 35 979 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Lcy3g1568 983 NCBIfam calcium-translocating P-type ATPase, PMCA-type 42 978 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Lcy3g1568 983 FunFam Calcium-transporting ATPase 422 620 - -
Lcy3g1568 983 ProSitePatterns E1-E2 ATPases phosphorylation site. 414 420 IPR018303 -
Lcy3g1568 983 SFLD p-type atpase 395 774 IPR044492 -
Lcy3g1568 983 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1568 Lcy-Chr3:42739283 Lcy4g1966 Lcy-Chr4:46044449 0 dispersed
Lcy3g1566 Lcy-Chr3:42718536 Lcy3g1568 Lcy-Chr3:42739283 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1568 K01537 - csv:101220140 1441.4