Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1572 ATGTTTGCTGCAACTATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGCGTCTCTTCTGGCACAAGAGTCCAGCCTGATTTCAGCTGCTTAAACCCTCTCCTTCCAACATTTTCTGATATTCACCACCCACCACAAAAGGTCAAGAAGAAACGAAGCCTCCCGGGCAACCCAGACCCAGATGCGGAAGTGATAGCGCTGTCGCCGAAAACACTTCTGGCGACGAATAGATTCGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAGAACTTGCAGCTGCACAGAAGAGGGCACAATTTGCCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCCTATGTTTGCCCAGAGCCCACATGTGTTCACCATCATCCTTCAAGAGCATTGGGCGATCTCACAGGAATCAAAAAACATTACTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGACAAATGTTCTAAAGTCTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCAAGGAAGGATAGCTTCATAACCCATAGAGCCTTTTGTGATGCATTGGCTGAAGAAAGTGCTAGGCTCTCAGCTAACCAATTGGCCATGGCGGCTGCTGCCGCTGCCTCGGGTGCCACCGCCACCAATATAAACCCGTCCTCCGCCACCGCCGCCCAATCTCTCTTTCCTTTTGGTACCCACCACCAGTTTCCAAACTCGTCGCTACCACCACCATTGCCACCACCGCCGCAAACCCACATGTCCCTAAACCCTTGGGACCATCCCCAAAACCCTAACCCTAATCATTCCCTCCAAATCATCAAGCCAGAAGACTCACATTCTCATTCTCATTCTCATCATTTTCACCAAATTCCAACTTTGCCCCTATCCAATTCCTCCTCAAACAACAATAACCACCACCCTTTTGGTCTAATTCAAGACCACAACCACCACAAGGCTGGCTCTTCCTCCTCCTCTTCCATGATAGCCTCACCATTCAGGAACCTCCACGTGTCGGTGCAACCGGCCTCGAATGCTGCCACGTCAGCTCACCTGTCAGCCACAGCCCTACTCCAAAAAGCTGCAACAGTTGGCGTTGGAGCTGCAAAATCCGGTCACCACCAGCCCGAGTCAGTGGGCCACATGACTCACTTCAACATGCCCGGCATCGCCGAGTTTGGCGCACCGAGTCACATTGACTCACTGACTCAACTCGGACCCGACTACGCCACGTGGCAGAAGAGTGACAGGCTGACCAGGGACTTTCTCGGTCTGACAGGAGATGGGAACGACGGCGGCCGTGGCGGTGGTTCCGGCGACGGCGGCAGTGGAGTGGTGCAGGTTAGCATGAGCGTTAAGGACATGCTAACGTACGCAGGGGGATTGGAGATGTTTAAGCCTCATAACAATAATGGTTTTGGATATGCGGAGCCAACTGCCAATGAAACTTGGGACTGCTGA 1509 50.36 MFAATMSNSTSLSEEASVSSGTRVQPDFSCLNPLLPTFSDIHHPPQKVKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPTCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAAASGATATNINPSSATAAQSLFPFGTHHQFPNSSLPPPLPPPPQTHMSLNPWDHPQNPNPNHSLQIIKPEDSHSHSHSHHFHQIPTLPLSNSSSNNNNHHPFGLIQDHNHHKAGSSSSSSMIASPFRNLHVSVQPASNAATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMPGIAEFGAPSHIDSLTQLGPDYATWQKSDRLTRDFLGLTGDGNDGGRGGGSGDGGSGVVQVSMSVKDMLTYAGGLEMFKPHNNNGFGYAEPTANETWDC 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42811765 42815674 - Maker00014552 Lcy3g1572 628764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1572 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Lcy3g1572 502 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 180 218 - -
Lcy3g1572 502 FunFam protein indeterminate-domain 12-like 57 125 - -
Lcy3g1572 502 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Lcy3g1572 502 MobiDBLite consensus disorder prediction 272 290 - -
Lcy3g1572 502 MobiDBLite consensus disorder prediction 249 344 - -
Lcy3g1572 502 Gene3D Classic Zinc Finger 147 212 - -
Lcy3g1572 502 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 153 177 - -
Lcy3g1572 502 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 447 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy3g1572 502 MobiDBLite consensus disorder prediction 304 326 - -
Lcy3g1572 502 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 115 149 - -
Lcy3g1572 502 MobiDBLite consensus disorder prediction 256 271 - -
Lcy3g1572 502 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Lcy3g1572 502 Gene3D Classic Zinc Finger 57 126 - -
Lcy3g1572 502 MobiDBLite consensus disorder prediction 41 62 - -
Lcy3g1572 502 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Lcy3g1572 502 SMART c2h2final6 154 174 IPR013087 -
Lcy3g1572 502 SMART c2h2final6 78 100 IPR013087 -
Lcy3g1572 502 SMART c2h2final6 119 149 IPR013087 -
Lcy3g1572 502 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1572 Lcy-Chr3:42811765 Lcy8g1391 Lcy-Chr8:40605432 4.44E-106 dispersed
Lcy3g1572 Lcy-Chr3:42811765 Lcy1g0725 Lcy-Chr1:6207818 8.79E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19865 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1572 K25870 - csv:101208253 738.028