Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1580 ATGGGCAACGCCGACTACGTGTACCCATCGGGGGGCGGCGGCGAGTGCTTGCACAGGGCGGCGATTCCGCCGGCGCAGCCGTTCGTGAAGTCGCTGAAGAACTCTCTGAAGGAGACGTTCTTCCCCGACGACCCGCTCCGGCAGTTCAAGAACCAGCCGGCGGGGAGGAAAGTGCGTCTGGGACTGCAGTACTTCTTTCCGGTGCTGGAATGGGGGCCTCGTTATACTCTTGGGCTTCTGAAATCGGATCTCATCTCCGGTATCACCATTGCCAGCCTCGCCATTCCTCAGGGGATCAGCTACGCCAAGCTCGCTAACTTGCCCCCAATCCTTGGCCTCTATTCGAGTTTTATTCCGCCGCTGATTTATGCTATGATGGGAAGCTCGAAGGACTTGGCCGTCGGAACGGTGGCGGTGGCGTCGCTTCTGATCAGCGCAATGTTAGGGGCGGAGGTTAACGCCGCCCACAATCCCACTCTTTATCTCCACCTTGCTTTCACCGCCACCTTCTTCGCCGGAGTCTTCCAAGCCTCCTTGGGCCTTCTGAGGCTAGGGTTCATCGTGGATTTTTTGTCACATGCAACCATAGTTGGGTTCATGGCTGGTGCCGCCACCGTGGTGTGCCTACAACAACTCAAAGGGATCCTTGGCCTAACCCATTTCACCCACGCGACCGACCTCGTCTCCGTACTCCGCTCGGTCTTCACCCAAGTCCACGAGAGCAAGAAAAAGCCAAAGTTGTTTTGGATATCAGCAATGGCACCTTTGACATCAGTAATTCTAGGAAGCCTTCTAGTGTTCCTCACTCATGCAGAAAAACACGGTGTCGAAGTGATTGGTGAGTTGAAGAAAGGGCTAAATCCAGTGTCCATAACGGATTTAGTGTTCGTGTCGCCTTATCTTTCCGTTGCTATTAAAACCGGCATCATCACTGGCATCATTGCTCTTGCGGAAGGAATAGCAGTTGGAAGAAGCTTTGCAATGTTCAAGCATTACAACATCGATGGCAACAAGGAAATGGTAGCCATTGGCACCATGAACATGGTCGGCTCTTGCTTCTCTTGCTATCTCACCACAGGCCCATTTTCGCGATCGGCCGTGAACTACAATGCAGGATGCAAAACGGCGGTTTCGAACATCGTAATGGCGATTGCAGTGATGTTGACGCTGCTGTTCTTGACTCCCCTGTTCCACTACACTCCTCTCGTGGTGCTTTCTTCCATCATCATTTCGGCCATGCTTGGCCTCATCGATTACGAGGCCGCCATTCACTTGTGGAAGGTCGATAAGTTCGATTTCCTTGTCTGTATTGGCGCTTATGCTGGTGTCGTCTTTGCCAGTGTTGAAATTGGCTTGGTCATTGCGGTGGCGATATCTCTGCTCAGACTACTTTTGTTCGTCGCAAGGCCGAGGACGCTTGTGCTTGGAAACCTTCCCAATTCCACTGTTTACAGGAACGTCGAGCAATACCCGAATGCCGATAATGTTCCCGGACTTCTCATACTTGAGATTGACGCTCCCATTTACTTTGCTAATTCCAGCTACTTGAGAGAAAGGATTATAAGGTGGGTAGATGAAGAGGAAGACAGGATAAAGGCTTCAGGAGAAAGTACCTTGCAATATGTCGTATTGGACATGAGTGCTGTTGGAAACATTGATACGAGTGGAATAAGCATGTTTGAAGAGATCAAGAAGATTTTAGACAGAAGGGGATTGAAGATAGTTTTGGCCAACCCTGGTGCTGAGGTGATGAAGAAGCTGGACAAGGGCAAGTTCATCGAGAGCCTGGGACACGAATGGATCTATCTTACGGTGGCCGAAGCTGTAGCAGCTTGCAACTATATGCTTCACTCCTGCAAACCTGTGACTGATGAGAAAGCAGAGCCATGGAACAATGTCTAA 1902 50.95 MGNADYVYPSGGGGECLHRAAIPPAQPFVKSLKNSLKETFFPDDPLRQFKNQPAGRKVRLGLQYFFPVLEWGPRYTLGLLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSKDLAVGTVAVASLLISAMLGAEVNAAHNPTLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHATIVGFMAGAATVVCLQQLKGILGLTHFTHATDLVSVLRSVFTQVHESKKKPKLFWISAMAPLTSVILGSLLVFLTHAEKHGVEVIGELKKGLNPVSITDLVFVSPYLSVAIKTGIITGIIALAEGIAVGRSFAMFKHYNIDGNKEMVAIGTMNMVGSCFSCYLTTGPFSRSAVNYNAGCKTAVSNIVMAIAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYEAAIHLWKVDKFDFLVCIGAYAGVVFASVEIGLVIAVAISLLRLLLFVARPRTLVLGNLPNSTVYRNVEQYPNADNVPGLLILEIDAPIYFANSSYLRERIIRWVDEEEDRIKASGESTLQYVVLDMSAVGNIDTSGISMFEEIKKILDRRGLKIVLANPGAEVMKKLDKGKFIESLGHEWIYLTVAEAVAACNYMLHSCKPVTDEKAEPWNNV 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42933186 42941761 + Maker00013686 Lcy3g1580 628772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1580 633 PANTHER SULFATE TRANSPORTER 38 613 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g1580 633 Gene3D STAS domain 469 615 IPR036513 -
Lcy3g1580 633 ProSiteProfiles STAS domain profile. 489 612 IPR002645 -
Lcy3g1580 633 ProSitePatterns SLC26A transporters signature. 109 130 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lcy3g1580 633 Pfam STAS domain 490 608 IPR002645 -
Lcy3g1580 633 SUPERFAMILY SpoIIaa-like 494 613 IPR036513 -
Lcy3g1580 633 Pfam Sulfate permease family 80 438 IPR011547 GO:0016020(InterPro)
Lcy3g1580 633 CDD STAS_SulP_like_sulfate_transporter 490 605 - -
Lcy3g1580 633 FunFam Sulfate transporter 31 469 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0805 Lcy-Chr2:7221734 Lcy3g1580 Lcy-Chr3:42933186 1.94E-227 dispersed
Lcy3g1580 Lcy-Chr3:42933186 Lcy3g2098 Lcy-Chr3:48012647 1.15E-254 dispersed
Lcy10g1812 Lcy-Chr10:42434872 Lcy3g1580 Lcy-Chr3:42933186 2.27E-100 transposed
Lcy11g1576 Lcy-Chr11:39572673 Lcy3g1580 Lcy-Chr3:42933186 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1580 K17471 - csv:101222260 1144.03