Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1584 ATGGATTTAATAAATGGGGGCGAGACCGGAGACACTCCGGTCGCCAAGAACTCTGGTAATCAAGGAGCGGATATTGTTTCTGGTAAGTCTAGTGATCCTCTAGAGAAGGATTTGGGTTCAAAGTTGGAGACAGGTAGCAAAAGCAGCAAGGATATGGTTTTTCGTGCTGATAAGATTGATTTCAAGAGCTGGGATATTCAGCTGGACAAGCACTTGAGCAGGGCTTGGTCAAGGGACAGGGAAGTGCCGGCCAAAAAGGAAGAATGGGAGATTGACTTGTCTAAGCTTGATATTAGATATGTTAAAGCTCATGGAACTTATGGTACTATTTACAGAGGAAACTATGATGGCAATGATGTTGCAGTGAAAGTGCTTGATTGGGGGGAGGATGGCGTTTCCTCAGTTGCTGAAATTGCTGCTCTTCGAGCTTCTTTTCGCCAGGAAGTTGCTGTTTGGCATAAGCTTGACCATCCCAATGTTGCAAAGTTTTTTGGAGCATCAATGGGGACGTCCAACCTTAAAATCCCTCTCCAAAGCTCATCAAGTGACAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTACCTTCCAGGTGGCACACTAAAGAGCTTTTTAATCAGAAATAGGAAAAAGAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTAGATCTTTCTAGAGGTTTGAGTTATCTACACTCCAAAAAGATTGTACACCGTGATATTAAAACAGAGAATGTGCTACTAGATGCTCAGAGGACTCTGAAAATTGTTGATTTTGGCGTTGCTCGAGTCGAAGCACAGAATCCAAGGGACATGACTGGAGAGACTGGCACCCTTGGTTACATGGCCCCCGAGGTCCTTGATGGTAAGCCTTATAATCGGAAATGCGACGTCTACAGTTTTGGTATATGTTTATGGGAAACATATTGCTGCGACATGCCGTACCCAGATCTCAGTTTTGCTGAAGTGTCGTCAGCAGTCGTGCGACAGAATTTACGACCAGAAATTCCGAGATGCTGCCCGAGTTCCTTGGCAAATATCATGAGAAGATGTTGGGATGCAAATCCAGAAAGGCGACCCGACATGGACGAGGTCGTAAACTTGTTGGAAGCCATCGATACGAGCAAGGGGGGTGGCATGATACCTGAAGACCAAGCATCCGGTTGTTTCTGTTTTGGTGTGCCTCGTGGTCCATAG 1212 45.13 MDLINGGETGDTPVAKNSGNQGADIVSGKSSDPLEKDLGSKLETGSKSSKDMVFRADKIDFKSWDIQLDKHLSRAWSRDREVPAKKEEWEIDLSKLDIRYVKAHGTYGTIYRGNYDGNDVAVKVLDWGEDGVSSVAEIAALRASFRQEVAVWHKLDHPNVAKFFGASMGTSNLKIPLQSSSSDSNQSFPSRACCVVVEYLPGGTLKSFLIRNRKKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLDAQRTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVRQNLRPEIPRCCPSSLANIMRRCWDANPERRPDMDEVVNLLEAIDTSKGGGMIPEDQASGCFCFGVPRGP 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42991060 42995167 + Maker00014920 Lcy3g1584 628776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1584 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1584 403 CDD STKc_MAP3K-like 103 374 - -
Lcy3g1584 403 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1584 403 MobiDBLite consensus disorder prediction 30 45 - -
Lcy3g1584 403 SMART serkin_6 96 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1584 403 Gene3D Transferase(Phosphotransferase) domain 1 200 387 - -
Lcy3g1584 403 Pfam Protein tyrosine and serine/threonine kinase 104 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1584 403 FunFam Serine/threonine-protein kinase HT1 200 385 - -
Lcy3g1584 403 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 56 375 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Lcy3g1584 403 SUPERFAMILY Protein kinase-like (PK-like) 78 374 IPR011009 -
Lcy3g1584 403 Gene3D Phosphorylase Kinase; domain 1 84 178 - -
Lcy3g1584 403 MobiDBLite consensus disorder prediction 1 45 - -
Lcy3g1584 403 MobiDBLite consensus disorder prediction 11 27 - -
Lcy3g1584 403 FunFam Kinase suppressor of Ras 1 85 179 - -
Lcy3g1584 403 PRINTS Tyrosine kinase catalytic domain signature 345 367 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1584 403 PRINTS Tyrosine kinase catalytic domain signature 197 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1584 403 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1584 403 PRINTS Tyrosine kinase catalytic domain signature 235 253 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0649 Lcy-Chr2:5539066 Lcy3g1584 Lcy-Chr3:42991060 2.14E-181 dispersed
Lcy3g1584 Lcy-Chr3:42991060 Lcy6g1863 Lcy-Chr6:38871793 3.40E-86 dispersed
Lcy6g1864 Lcy-Chr6:38878132 Lcy3g1584 Lcy-Chr3:42991060 3.58E-69 transposed
Lcy11g1570 Lcy-Chr11:39503487 Lcy3g1584 Lcy-Chr3:42991060 7.44E-230 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65794 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1584 - - - 0.0