Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1640 ATGTTTTCAGATTCATTGAATCTAGTGAATATGCCTTTGGCTCCGGGATCTGAAGTTGGAATCTACTATTGGTCGAGGATGCTTCCGTGGGGAGGTCTTAGTTGCTGTTTGAGTGCAGCTGCTCTTTATCTTCTTGGAAGGAGTAGTGGCCGGGATGCGGAGTTGCTGAAATCTGTCACGCGGGTCAATCAACTGAAGGAACTGGCTCAATTGCTAGAGGCTGAATGTGTATTACCTTTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTGATACACCAATAAATTGCGAGTTTAGCGGTTTGCGGGGTGTAATTGTGGAGGAAACGGCAGAACAACACTTTCTAAAGCACAATGATGCAGGATCATGGATTCAGGATTCTGCACTGATGCTCTCCATGAGCAAAGAAGTTCCTTGGTATCTGGATGATGGGACCGGTCGTGCATCTGTGGTGGGAGCTCGAAGTGCCACAAATTTTATATTACCAGTAGTGAGCGAGATATTTGAAGAGTCTGGCAGATCCCTCATGCGTGGAACCTTAGATTATCTTCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATAGAGCGTGTACTACCTACTGGTACTTCCTTGACTGTTGTTGGTGAGGCTGCCAAAGATGACATTGGCACCATCAGAATACAACGACCGCACAAAGGGCCATTTTATGTCTCCCCAAAAACAATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCCGTGGGTTTGAGCATATTTGGTTTGTATCTTGTCACAAAGCATGCTATTCTTTATCTCATGGAGAGAAGGCGCCGCTGGGAATTGCAGAAAAGGGTGCTAGCTGCAGCTGCCAAGAGATCAAGCCAAGAAAATGAAGGGGAAAATGAAAAGGCCAGCAATGGAACAGATGGTACAAAGAGAGATCGGTCAATGCCAGACCTTTGTGTAATATGTCTTGAGAGAGACTACAATGCTGTTTTTGTCCCGTGCGGCCATATGTGCTGCTGTGTAGCATGTTGTTCACATTTAACAAACTGTCCACTCTGTCGTCGACGAATTGAGCTGGTGGTAAAGACTTTCCGCCATTGA 1107 45.71 MFSDSLNLVNMPLAPGSEVGIYYWSRMLPWGGLSCCLSAAALYLLGRSSGRDAELLKSVTRVNQLKELAQLLEAECVLPLVVAISGRVSSDTPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRASVVGARSATNFILPVVSEIFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLISNLGKWARWYKYASVGLSIFGLYLVTKHAILYLMERRRRWELQKRVLAAAAKRSSQENEGENEKASNGTDGTKRDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSHLTNCPLCRRRIELVVKTFRH 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43614313 43623840 + Maker00014427 Lcy3g1640 628832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1640 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 367 IPR013083 -
Lcy3g1640 368 PANTHER - 27 364 IPR044231 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy3g1640 368 Pfam E3 Ubiquitin ligase 111 261 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
Lcy3g1640 368 Pfam Zinc finger, C3HC4 type (RING finger) 319 360 - -
Lcy3g1640 368 MobiDBLite consensus disorder prediction 295 312 - -
Lcy3g1640 368 ProSiteProfiles Zinc finger RING-type profile. 321 356 IPR001841 -
Lcy3g1640 368 MobiDBLite consensus disorder prediction 292 312 - -
Lcy3g1640 368 SUPERFAMILY RING/U-box 320 362 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1640 K15688 - csv:101218196 655.595