Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1650 ATGTCCATTTCTCCCCTGCCCTTTCTCCTTCTTCTCGCCATAGCCTCCTTCTCCGCCGCCGCCACCGCCGCCGAATGTCCTCTCAACTTCACCGTCCTCCGCCAATTCTCCCAGGGCTCCGCCGTCTCCCGCCCCGATTTCTCCGACGAATGTCAATACATCCGCCTCGGCCTCCGCCTCGTCCTCGCGCAGTACCTCAAACTCACTGGCTCGTTCTTGCCGCCGGTGAACTCTTCCGATTCGTGCTGGGATTCTTACCAGTCGATCGTTAATAGGACTTGGCCGAATTTCAACATTCGGACCTCTTGCGGGTTTCAAACCGGGTGGATCTCCCAGGGATGTATGAACATCACTACCAAAGCTGAGTTCGAGAGAATCGTTCCTAAATCGGCGCTCGATGGCGTTGTTGCGAACTGTAACCAATCGCTTGAAAATGGTTCCCCCTGTGCCTCTTGCACGACGAGGCTCTCGATCGTTCAGGCCTCGTTCTTGACCGGTCCGTCCATCGGCAATGTCACCGATTGCCAAGCATATCCGTCAATCTACGCGGCGGCGTTTGCAAATCAGTTCGGACCGACCGACTCGGGAACTGCCCAATGCTTGTTCTCGCTCAATCCTCTGTCGTCGGGGGATTCGAGAAGCAAGAAGCGGAGTACGGTGGTTTTGGTGGTTCTGATTTGTTGTGGCGTTGCATTGGCCGCGGCGGCGGTGGCTGCCGGCGGGTGGTTTTTCTGGCGAAAACAGGGGAAATTGAAGAAGAATGATAGAATTCGTAGAGTTGAAACGGGTTTGGGTTCTGGATTGGAGTCGATAAGCGCAAGCACTACGCTGGTGAAGTTCACATTCGATGAAATCAAGAGGGCTACAAGGAATTTCTCTAGAGATAACATAATTGGGAGAGGGGGTTATGGAAATGTGTATAAAGGGATGCTATCTGATGATTCTGAAGTTGCATTGAAGCGGTTTAAGAACTGTTCTGCAGTCGGGGACGCCATTTTTGCTCATGAAGTTGAGGTAATTTCTAGTGTTAGACATGTTAATCTTGTTGCTTTGAGAGGTTATTGTATTGCAACTACTCCATTAGAGGGTCATCAGAGGATAATTGTGTGTGATTTGATGAAGAATGGGAGTGTTTATGACCATTTGTTTGGGTATTCTGATGAGAGATTGAGTTGGCCAATTAGGCAGAAGATTGCTCTTGGCACAGCTAGGGGATTGGCTTATCTTCATTATGGAGCTCAGCCTGCCATTATCCATAGAGATATCAAAGCTAGCAACATTCTTTTGGATGAAAATTTTGACCCCAAGGTAGCTGACTTTGGTTTGGCTAAGTTCACACCAGAAGGAATGACTCATTTGAGCACAAGAGTTGCTGGAACTATGGGGTATGTGGCCCCCGAGTATGCGTTGTACGGTCAGTTGACGGAGAGGAGTGACGTGTACAGCTTTGGAGTTGTTCTGCTCGAGCTTTTGAGCGGGAGGAAGGCGCTCGGGGTGAGGAGCAACGATAGTCAGCCATTTCTAGTGACTGATTGGGCTTGGTCTTTGGTGAGGGAACAAAGGGCAATGGATGTTGTTGAAGAAGGCATGCCAGAGCTGGGTTCCCCTGAGGTTGTTGAGAAGTATGTTTTGATTGCTGTTCTTTGTTCCCATCCCCAGCTCTATGCTAGGCCATCAATGGATCAAGTTGTGAAAATGTTGGAAACTGATCTCTCTGTTCCTTCAATCCCTGAGAGGCCCATCCCTCTGGTTGCTGAGATTGATGAAATTGAGAGATCTATGAGTAGTAGTAGCTCTGCTCAGCATTCTGGTTCAGTTGGCTTTCATAGTTACACATTACCAAATGACCATAGGTAG 1857 49.33 MSISPLPFLLLLAIASFSAAATAAECPLNFTVLRQFSQGSAVSRPDFSDECQYIRLGLRLVLAQYLKLTGSFLPPVNSSDSCWDSYQSIVNRTWPNFNIRTSCGFQTGWISQGCMNITTKAEFERIVPKSALDGVVANCNQSLENGSPCASCTTRLSIVQASFLTGPSIGNVTDCQAYPSIYAAAFANQFGPTDSGTAQCLFSLNPLSSGDSRSKKRSTVVLVVLICCGVALAAAAVAAGGWFFWRKQGKLKKNDRIRRVETGLGSGLESISASTTLVKFTFDEIKRATRNFSRDNIIGRGGYGNVYKGMLSDDSEVALKRFKNCSAVGDAIFAHEVEVISSVRHVNLVALRGYCIATTPLEGHQRIIVCDLMKNGSVYDHLFGYSDERLSWPIRQKIALGTARGLAYLHYGAQPAIIHRDIKASNILLDENFDPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGRKALGVRSNDSQPFLVTDWAWSLVREQRAMDVVEEGMPELGSPEVVEKYVLIAVLCSHPQLYARPSMDQVVKMLETDLSVPSIPERPIPLVAEIDEIERSMSSSSSAQHSGSVGFHSYTLPNDHR 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43729443 43731299 - Maker00013826 Lcy3g1650 628842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1650 618 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 373 575 - -
Lcy3g1650 618 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 253 371 - -
Lcy3g1650 618 Gene3D Transferase(Phosphotransferase) domain 1 373 581 - -
Lcy3g1650 618 PANTHER OS01G0750732 PROTEIN 49 599 IPR050885 -
Lcy3g1650 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1650 618 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524(InterPro)
Lcy3g1650 618 ProSiteProfiles Protein kinase domain profile. 292 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1650 618 Gene3D Phosphorylase Kinase; domain 1 259 371 - -
Lcy3g1650 618 SUPERFAMILY Protein kinase-like (PK-like) 276 598 IPR011009 -
Lcy3g1650 618 MobiDBLite consensus disorder prediction 592 610 - -
Lcy3g1650 618 Pfam SPARK 22 175 IPR043891 -
Lcy3g1650 618 Pfam Protein kinase domain 294 509 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1650 618 SMART serkin_6 292 567 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1650 618 MobiDBLite consensus disorder prediction 592 618 - -
Lcy3g1650 618 CDD STKc_IRAK 298 568 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1650 Lcy-Chr3:43729443 Lcy9g1547 Lcy-Chr9:40584577 4.39E-105 dispersed
Lcy8g0911 Lcy-Chr8:32722906 Lcy3g1650 Lcy-Chr3:43729443 3.49E-22 dispersed
Lcy6g0566 Lcy-Chr6:5368472 Lcy3g1650 Lcy-Chr3:43729443 1.10E-109 transposed
Lcy13g0220 Lcy-Chr13:2259786 Lcy3g1650 Lcy-Chr3:43729443 4.41E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65795 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1650 - - - 0.0