Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g1670 | ATGGATTCAAGTCCATTCACTTTTCTGTCGCAACTGGGGCTGAAAGCAGACTCGGAAGCGGCGCACTTCACATTTTTTGCGTTGCTTCTCTTTGTTTGTTATCTAATTGTTCGTCTTTTTGAGAAGAGACGTTGGCTGAATGAATCAGTTACTTCCCTAGCCATTGGAATTCTCACCGGAATTTTCGTTCTTCTAACTACCGGAGGAAAAAGTTCTCACATCTTAGTATTCAATGAACAGCTTTTCTTCATCTACCTGCTTCCACCCATAATATTTAATGCTGGGTTTCAGGTGAAGAAGAAACAGTTCTTTCGCAACTTTCTGGCAATCATGTTGTTTGGTGCTTTTGGAAGTGTGATATCATTCTTCATCATATCACTAGGTTCCCTCAACTTATTCAAGAAACTGGATGTTGGCTTATTAGACACCCAGGATTATTTTGTATACATGTTTTCTTACTATTTATTAATATATATATTTTTTTTACTTGTAGCACTGGGGGCAATCTTAACCGCAACAGATAGTGTTTGCACGTTGCAAGTTCTTAAACAAGATGAGACACCCTTACTTTATAGTCTGGTCTTTGGCGAAGGTGTGGTCAATGATGCTACCTCAGTGGTACTCTTTAATGCAATCAAGAAATTTGACCTTGCTCACATCACTTCTGCAAATGCCATTCAGTTAGCCGGAAGTTTCTTAAGTTTGTTCTTGGAAAGCACATTGCTGGGAATAGCAGTTGGGCTGCTATGTGCATTTATCATAAAGAAGCTATCCTTAGGCAGGCATCCTACAGATTATGAAGTTGTTCCGATGATTTTGATGGCCTACCTTTCATATATGATTGCTGAAGTAAGACTTCTTATGTGCTGTCAACTGTTGCTTCTTAGCGGTATTCTTAGTGTGTTCTTTTGTGGGATTGCCATGTCTCACTACACATCTTGGCATAATGAGAGTGAAAGTTCCAGTCGGACACCTCGACAGATACCTCGCCATGCTTTTGCAACATTATCTTTCGTTGCAGAGATTTTCATCTTCCTTTATGTTGGTATGGATGCTTTGGATATTGAGAAGTGGAATGTTGTTAGAGAAAGCCCTGGGACATCAGTTGGAGCAAGTCTTATACTGCTAGGTCTTGTTCTTGTTGGTAGAGCAGCTTTTGTATTCCCACTTTCTTTCATATCCAACTTGACAAGAAAGCATAAAAAATACCATATTGGGTTTAAACAGCAGTTTACAATTTGGTGGGCTGGGCTTATGAGAGGAGCTGTATCAGTGGCACTTGCTTATCATCAGTTTGCAAAGTCAGGGAAAAATGAACGAGGGTCTTCGATGATGATAACTAGCACCATTACCATTGTTCTCTTCACTAATGTGGTTTGTGGATTGTTCACCAAGTATATAGTAAGACGCATGATTCCTCAAACGAACGACTCAGAACATTTATATTTTCCCACGCTTGAAGAATTGAATGAACCATTACTTGTAGACAATAATCTTGAATCTGACGAGGACGAAATAAACCAACTTCGTCCAAATAGTTTCATGTCGCTGTTGATGACATCTCCAACTCAATGTTTTCATTACTATTGGCGGAAATTTGATGATTGTTTTATGCGTCCTATTTTTGGAGGAAGTGAATCATCATTAGAGTATCTCAGTCCCTAA | 1665 | 39.22 | MDSSPFTFLSQLGLKADSEAAHFTFFALLLFVCYLIVRLFEKRRWLNESVTSLAIGILTGIFVLLTTGGKSSHILVFNEQLFFIYLLPPIIFNAGFQVKKKQFFRNFLAIMLFGAFGSVISFFIISLGSLNLFKKLDVGLLDTQDYFVYMFSYYLLIYIFFLLVALGAILTATDSVCTLQVLKQDETPLLYSLVFGEGVVNDATSVVLFNAIKKFDLAHITSANAIQLAGSFLSLFLESTLLGIAVGLLCAFIIKKLSLGRHPTDYEVVPMILMAYLSYMIAEVRLLMCCQLLLLSGILSVFFCGIAMSHYTSWHNESESSSRTPRQIPRHAFATLSFVAEIFIFLYVGMDALDIEKWNVVRESPGTSVGASLILLGLVLVGRAAFVFPLSFISNLTRKHKKYHIGFKQQFTIWWAGLMRGAVSVALAYHQFAKSGKNERGSSMMITSTITIVLFTNVVCGLFTKYIVRRMIPQTNDSEHLYFPTLEELNEPLLVDNNLESDEDEINQLRPNSFMSLLMTSPTQCFHYYWRKFDDCFMRPIFGGSESSLEYLSP | 554 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 43977179 | 43984608 | - | Maker00013780 | Lcy3g1670 | 628862 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g1670 | 554 | Gene3D | - | 163 | 211 | - | - | |
| Lcy3g1670 | 554 | PRINTS | Na+/H+ exchanger signature | 110 | 118 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy3g1670 | 554 | PRINTS | Na+/H+ exchanger signature | 167 | 177 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy3g1670 | 554 | PRINTS | Na+/H+ exchanger signature | 95 | 109 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy3g1670 | 554 | PRINTS | Na+/H+ exchanger signature | 81 | 92 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy3g1670 | 554 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 22 | 546 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Lcy3g1670 | 554 | Pfam | Sodium/hydrogen exchanger family | 29 | 469 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g1844 | Lcy-Chr2:31920179 | Lcy3g1670 | Lcy-Chr3:43977179 | 1.87E-194 | dispersed | |
| Lcy3g1670 | Lcy-Chr3:43977179 | Lcy9g1151 | Lcy-Chr9:35522556 | 4.47E-105 | dispersed | |
| Lcy3g1670 | Lcy-Chr3:43977179 | Lcy3g1671 | Lcy-Chr3:43987360 | 9.15E-152 | tandem | |
| Lcy13g0204 | Lcy-Chr13:2118084 | Lcy3g1670 | Lcy-Chr3:43977179 | 2.32E-190 | wgd |
Pathway information