Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1706 GAATTAGATCATGGCAACTTGTCTTCAGCCAACAGTGTGGAAGATCAAGAAGAAGTTGAACAAAACAACCTCAATCACTTCCGCTATGCCTGTCCCAATGAAGATCAAACTAACACCCATGCCTCATCTTCACTTCACCAACAAAGAGTTAAGAAGAAGCGGAATCTCCCCGGCACTCCAGGCAAATCCCGCTCATCGACTCTTTCTTTCATTTTCATTTATATCTCTGAATTAAATTTTGCAGATCCAAATGCTGAAGTTGTTGCTCTATCACCAACAACCCTAATGGCCACAAATAGGTTTGTGTGTGAGATTTGCAACAAGGGTTTTCAAAGAGATCAAAACCTTCAATTGCACAGGAGAGGACACAACCTTCCATGGAAACTCCGGCAAAGAACCGGCACCGAAGTGAAGAAAAAGGTCTACGTCTGCCCCGAACCAACGTGCGTTCATCACAGCCCGGCTCGAGCCCTCGGCGATCTTACCGGAATTAAGAAGCATTTTAGCAGAAAACATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCCAAGAAATATGCAGTTCAGTCTGATTGGAAAGCTCATCAAAAGACCTGTGGCACTAGAGAATACAAATGTGACTGTGGAACTGTCTTTTCCAGAAGAGACAGTTTCATCACTCACAGAGCCTTCTGCGATGCATTAACAGAAGAAAACAACAAACTAATAAAGCAAGGACTTGTCAACAACATAGAACCAATCTCAATCTCCACTCCAAAACTCACTCATTTTGGCGCATCAATAATGCCTGAATTCAACCCTTATCATCACAAGAACCCTCTCAAATCCCTCCCTCAAGAACTCAACAATAACTCGACCCCGTTCGCCGCCACCGGTGCACCCGGAGGCTTGTTCGTGGCCGGAGCTAGAAGTTGTAACTCGTCCTCTTTCTCAAGCCTTCAGCTCAGTTCCACCACCTCCTCTTCGCGCTTCAGCTACCTTCACGACAGCAAGAATGACTGTCTTCAGGTTTCCGGGTCGGCAACCGCAGCACTGGTAACGTCGGCCACGGCCTTGTTGCAGAAAGCTGCGCAGATAGGAGCCACAACAAGCTCCATTGGTGGTTTGAACTCAGCATTAGAAATGGCACATTCTGATCAACCAGACATGGTAGGGATGAATATGGGGATGTACGGACAGATGATGTTGATGAAAGAACAAGACAACTGTAGTAGCAGCAGCTCGAGTTTCGTCGTCCACGAAAAGGGACAGTGGCGACCGGTATCGAGGTTTTCCGGTGGCGGCGGAGAGAGCCAGATGATGACTCTTGATTTGTTGGGAGAAGGAGAGTGGAGGGTGAGGCAGTTGCAAGAAGATCAAAGCCAGCAGCAGATGGTGCCAATGATGAAGCATTTTGAGCTGCAAAATTTTCATGGGGATTCAACTGTTGACAAGCCCATGTTTGAGTTCTGA 1452 46.83 ELDHGNLSSANSVEDQEEVEQNNLNHFRYACPNEDQTNTHASSSLHQQRVKKKRNLPGTPGKSRSSTLSFIFIYISELNFADPNAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGTEVKKKVYVCPEPTCVHHSPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHQKTCGTREYKCDCGTVFSRRDSFITHRAFCDALTEENNKLIKQGLVNNIEPISISTPKLTHFGASIMPEFNPYHHKNPLKSLPQELNNNSTPFAATGAPGGLFVAGARSCNSSSFSSLQLSSTTSSSRFSYLHDSKNDCLQVSGSATAALVTSATALLQKAAQIGATTSSIGGLNSALEMAHSDQPDMVGMNMGMYGQMMLMKEQDNCSSSSSSFVVHEKGQWRPVSRFSGGGGESQMMTLDLLGEGEWRVRQLQEDQSQQQMVPMMKHFELQNFHGDSTVDKPMFEF 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44369158 44372127 - Maker00013660 Lcy3g1706 628898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1706 483 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 138 172 - -
Lcy3g1706 483 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 453 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy3g1706 483 Pfam Zinc-finger of C2H2 type 101 123 IPR013087 -
Lcy3g1706 483 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Lcy3g1706 483 Gene3D Classic Zinc Finger 155 234 - -
Lcy3g1706 483 MobiDBLite consensus disorder prediction 30 64 - -
Lcy3g1706 483 Gene3D Classic Zinc Finger 4 128 - -
Lcy3g1706 483 FunFam protein indeterminate-domain 12-like 80 148 - -
Lcy3g1706 483 SUPERFAMILY beta-beta-alpha zinc fingers 100 198 IPR036236 -
Lcy3g1706 483 FunFam protein indeterminate-domain 5, chloroplastic-like 155 234 - -
Lcy3g1706 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 123 IPR013087 -
Lcy3g1706 483 MobiDBLite consensus disorder prediction 30 45 - -
Lcy3g1706 483 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 176 200 - -
Lcy3g1706 483 SMART c2h2final6 177 197 IPR013087 -
Lcy3g1706 483 SMART c2h2final6 142 172 IPR013087 -
Lcy3g1706 483 SMART c2h2final6 101 123 IPR013087 -
Lcy3g1706 483 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 203 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1706 Lcy-Chr3:44369158 Lcy9g2183 Lcy-Chr9:46486329 2.36E-98 dispersed
Lcy3g1706 Lcy-Chr3:44369158 Lcy2g2121 Lcy-Chr2:42314412 6.23E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19870 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1706 - - - 0.0