Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1707 ATGGATGATAACACAGGCAAGCAAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCACCGGAGGCGGCCGCGTTGGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCCGGTAGCGGTGTCGGTGTCGTCGTAAAAGAGCAAGATCGGTTGCTGCCGATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCGAACGCGAAAATCTCGAAAGAAGCGAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTGACCGGGGAGGCGTCGGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGAGATGACATTTGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGATCGAGAAGAGTTTTAAAGATGATCAGAAAACCCTACATATATTAGACAGGGGATTGCATAGTATGGCAATTCGGGTTGGATTGCTGGCTGTTGGCGAGATGGGGCCTCCTCGATTGTTGGTGGAGTCAGATTGTTTGACAGTTGTAAATCTCTTAAATGGGGTGGATGAGAACTTCACCTTAGTTCGTTCTGTGGCTATGGAGGTGCATAAGCTTTCTTCTTGTTTGGTGGAAGTACAGTTTAAACATATTCGACAAGGGCAAAATTTGGTGGCTGATATGTTGGCGCGACGAGCAATGAGTAATGGGAATTATGGCACCTGGTTTTCGGGGTTTCCATGTTGGCTTCTTGAAGCATTAGAGGGTGACAAGCGAAAGTTGGTGTAA 777 47.36 MDDNTGKQERLVEFKYDFSTGGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIEKSFKDDQKTLHILDRGLHSMAIRVGLLAVGEMGPPRLLVESDCLTVVNLLNGVDENFTLVRSVAMEVHKLSSCLVEVQFKHIRQGQNLVADMLARRAMSNGNYGTWFSGFPCWLLEALEGDKRKLV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44383803 44387644 + Maker00015333 Lcy3g1707 628899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1707 258 Pfam Reverse transcriptase-like 152 229 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lcy3g1707 258 Gene3D - 150 234 IPR036397 GO:0003676(InterPro)
Lcy3g1707 258 Gene3D Histone, subunit A 43 144 IPR009072 GO:0046982(InterPro)
Lcy3g1707 258 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 41 132 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lcy3g1707 258 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
Lcy3g1707 258 CDD RNase_H_like 152 227 IPR044730 -
Lcy3g1707 258 ProSitePatterns NF-YB/HAP3 subunit signature. 81 97 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g1707 258 SUPERFAMILY Ribonuclease H-like 152 232 IPR012337 -
Lcy3g1707 258 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Lcy3g1707 258 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Lcy3g1707 258 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Lcy3g1707 258 SUPERFAMILY Histone-fold 47 133 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1707 K08065 - - csv:101204763 215.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0463 Lcy-Chr2:3949727 Lcy3g1707 Lcy-Chr3:44383803 4.73E-11 dispersed
Lcy2g2107 Lcy-Chr2:41937196 Lcy3g1707 Lcy-Chr3:44383803 2.28E-32 dispersed
Lcy2g2113 Lcy-Chr2:42056656 Lcy3g1707 Lcy-Chr3:44383803 1.02E-29 dispersed
Lcy3g1707 Lcy-Chr3:44383803 Lcy5g0605 Lcy-Chr5:7196628 1.97E-56 dispersed
Lcy3g1707 Lcy-Chr3:44383803 Lcy11g0616 Lcy-Chr11:15770041 1.35E-53 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g1821 . 159 259 CCAAT-HAP3 Transcription Factor Family AT5G47670 85.1 6.8e-47 184.9
Lcy8g1350 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 9.9e-38 154.5
Lcy6g1821 . 156 283 CCAAT-HAP3 Transcription Factor Family AT1G21970 70.1 3.3e-49 192.6
Lcy8g1350 . 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.9 1.3e-57 219.9
Lcy6g1843 . 1 149 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.3 3.2e-51 198.7
Lcy7g0811 . 108 212 CCAAT-HAP3 Transcription Factor Family AT4G14540 79.0 1.1e-43 173.7
Lcy5g0258 . 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.0 1.0e-41 167.2
Lcy7g0811 . 102 215 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.5 5.3e-48 188.0
Lcy5g0258 . 1 154 CCAAT-HAP3 Transcription Factor Family AT2G38880 63.0 7.6e-47 184.1
Lcy8g1350 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.9e-42 169.5
Lcy6g1843 . 1 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.3 2.5e-42 169.1
Lcy3g1707 . 41 143 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.7 1.9e-40 162.9
Lcy6g1843 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 78.1 3.3e-40 162.2
Lcy8g1350 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 8.0e-39 157.5
Lcy5g0258 . 7 195 CCAAT-HAP3 Transcription Factor Family AT2G37060 62.0 9.5e-54 207.2
Lcy7g0811 . 105 256 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.1 1.8e-52 203.0
Lcy8g1350 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.8e-44 176.4
Lcy6g1843 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.4e-43 172.2
Lcy8g1350 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 5.0e-44 175.3
Lcy6g1843 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 4.7e-42 168.7
Lcy7g0811 . 121 211 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.9 6.3e-39 158.3
Lcy5g0258 . 7 124 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.0 8.2e-39 157.9
Lcy8g1350 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 7.5e-52 201.1
Lcy6g1843 . 1 119 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.8 7.8e-49 191.0
Lcy7g0811 . 104 212 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.5 9.2e-42 167.5
Lcy5g0258 . 11 125 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.6 6.6e-40 161.4
Lcy7g0811 . 106 245 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.9 1.8e-52 203.0
Lcy5g0258 . 12 195 CCAAT-HAP3 Transcription Factor Family AT3G53340 57.6 1.7e-50 196.4
Lcy8g1350 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 3.7e-45 178.7
Lcy6g1843 . 6 137 CCAAT-HAP3 Transcription Factor Family AT3G53340 66.7 3.1e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005137 2 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 2 2 2 5 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19871 None None None None Lcy TF