Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1707 ATGGATGATAACACAGGCAAGCAAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCACCGGAGGCGGCCGCGTTGGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCCGGTAGCGGTGTCGGTGTCGTCGTAAAAGAGCAAGATCGGTTGCTGCCGATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCGAACGCGAAAATCTCGAAAGAAGCGAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTGACCGGGGAGGCGTCGGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGAGATGACATTTGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGATCGAGAAGAGTTTTAAAGATGATCAGAAAACCCTACATATATTAGACAGGGGATTGCATAGTATGGCAATTCGGGTTGGATTGCTGGCTGTTGGCGAGATGGGGCCTCCTCGATTGTTGGTGGAGTCAGATTGTTTGACAGTTGTAAATCTCTTAAATGGGGTGGATGAGAACTTCACCTTAGTTCGTTCTGTGGCTATGGAGGTGCATAAGCTTTCTTCTTGTTTGGTGGAAGTACAGTTTAAACATATTCGACAAGGGCAAAATTTGGTGGCTGATATGTTGGCGCGACGAGCAATGAGTAATGGGAATTATGGCACCTGGTTTTCGGGGTTTCCATGTTGGCTTCTTGAAGCATTAGAGGGTGACAAGCGAAAGTTGGTGTAA 777 47.36 MDDNTGKQERLVEFKYDFSTGGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIEKSFKDDQKTLHILDRGLHSMAIRVGLLAVGEMGPPRLLVESDCLTVVNLLNGVDENFTLVRSVAMEVHKLSSCLVEVQFKHIRQGQNLVADMLARRAMSNGNYGTWFSGFPCWLLEALEGDKRKLV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44383803 44387644 + Maker00015333 Lcy3g1707 628899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1707 258 Pfam Reverse transcriptase-like 152 229 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lcy3g1707 258 Gene3D - 150 234 IPR036397 GO:0003676(InterPro)
Lcy3g1707 258 Gene3D Histone, subunit A 43 144 IPR009072 GO:0046982(InterPro)
Lcy3g1707 258 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 41 132 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lcy3g1707 258 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
Lcy3g1707 258 CDD RNase_H_like 152 227 IPR044730 -
Lcy3g1707 258 ProSitePatterns NF-YB/HAP3 subunit signature. 81 97 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g1707 258 SUPERFAMILY Ribonuclease H-like 152 232 IPR012337 -
Lcy3g1707 258 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Lcy3g1707 258 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Lcy3g1707 258 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Lcy3g1707 258 SUPERFAMILY Histone-fold 47 133 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0463 Lcy-Chr2:3949727 Lcy3g1707 Lcy-Chr3:44383803 4.73E-11 dispersed
Lcy2g2107 Lcy-Chr2:41937196 Lcy3g1707 Lcy-Chr3:44383803 2.28E-32 dispersed
Lcy2g2113 Lcy-Chr2:42056656 Lcy3g1707 Lcy-Chr3:44383803 1.02E-29 dispersed
Lcy3g1707 Lcy-Chr3:44383803 Lcy5g0605 Lcy-Chr5:7196628 1.97E-56 dispersed
Lcy3g1707 Lcy-Chr3:44383803 Lcy11g0616 Lcy-Chr11:15770041 1.35E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19871 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1707 K08065 - csv:101204763 215.698