Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1708 ATGGAAGTCGATCGGACGGCCAATAACTTTCCGGACCTCCAAGAGAGCTCCGACGATTCTAGTCCGAAACTCGCAGAGAGAAAGCTCCGACGAAACGACTCTTTGGATGTTGAATCCCGCACCGTCCCTGGCGCTGGCGCCGGCGGCCACGCCCACAAGGGATTTGTGTTGTTGTTTCGGGTGTCCGGCAAGGCGGCGGCGGCGAGCTGGGGAGTGATACTGCATCTGGCTTTTCAGAGCGTCGGAGTGGTGTACGGCGACATCGGAACGTCGCCGTTGTATGTGTATGCGAGTACTTTCACCGATGGAATCAAGCATAACGACGACGTTTTGGGTGTCCTTTCTTTGATTCTCTACACCCTCACTTTGATCCCTTTGCTTAAGTACGTCTTCTTCGTCTTGCAGGCCAACGACAACGGCGAAGGTGGGACATTTGCTTTATACTCTCTACTATGCCGATATGCAAAAATCGGGCTGATACCAAGCGAGCAAGTGGAAGATCAAGAGGTATCAAATTTTCAGGTGGAGCTGCCGACCAACCGCCAGAGAATGGCGTCTTGCCTCAAGTCCAAGCTCGAAAACAGCCGCGCCGCCAAGATTTTCTTGCTCTTCGCCACCATGCTCGGCACTTCCATGGTCATCGGCGACGGCGTCCTCACTCCTTCCATCTCAGACAAAATAGTTTGGATATCAGCAGCAATCTTGGTTTGCCTGTTCATGGTGCAAAGATTTGGAACCCATAAAGTTGGATACTCCTTTGCTCCCATTATTTGCATTTGGTTTGCACTTATTGGTGGCATTGGCTTCTACAACTTTCTGAAATTTGATCCTGCTGTCATCAAAGCTGTAAATCCAAAATACATTTTTGACTACTTCAAAAGAAACAAAAAGGATGCTTGGATCTCTCTCGGTGGTGTCGTTCTCGCAATTACAGGGACTGAAGCTCTATTTGCGGACGTGGGGCACTTCACAGTGATGTCCATAAGACTAAGCATGTGCTGCGTGGCCTACCCTGCCCTCGTCTCCGCCTATGTCGGCCAAGCCTCCTTCCTTCGCAAGCACACTGACCTCGTCTCCGACACCTTTTTTAGCTCCATTCCAGGTCCTCTCTACTGGCCGACGTTCGTGGTGGCCGTGCTCGCCTCCATCGTTGCTAGCCAAGCCATGATCTCCGGCACCTTCTCCATCATCCAACAGTCCCTCTCCTATGGCTGCTTCCCTAGAGTTAAAGTTGTTCATACTTCTTCCAAGTATGAGGGGCAAGTTTACATCCCGGAAGTTAACTACCTTCTCATGTTGGCTTGTCTTGGAGTCACTCTAGGGTTTAAAGATACCACGAGAATCGGGAACGCCTACGGCATTGCAGTGGTGTTTGTTATGGCACTCACTTCAAGTTTTCTAGTGCTCATCATGATCATGATATGGAAATCTCACATACTTGTCATAATCTCCTATGTTCTCACCATTGGCTTATTGGAATTTTTCTATCTTAGTTCAGTCCTTTACAAGTTTGATCAAGGGGGCTATCTTCCTTTAGCTTTTGCTGGCTTTTTGATGACAATAATGTACATTTGGAATGATGTCCATAGAAGAAAATACTACTACGAACTTGAGCACAAAATTTCTCCTCAAAAGCTCAAGGACATTGCATCCCTCACGACCGTCAATCGCGTCCCCGGCCTTGCCTTGTTCTACTCGGAACTTGTCCAAGGCATTCCCCCAATCTTCAAGCATTATCTAGCCAACGTGCCGACTCTCCAAAGGGTCCTCGTTTTCGTGTCCTTCAAGTCCCTCCCGATAAGCAAAGTCCCGATGGAGGAGCGGTTCCTGTTTCGACGAGTGGAGCCTAATGACCTCAATGTGTTTCGATGTGTGGTTCGATATGGATACAGAGATATCATCCACGAACAAGAGTCGTTCGAGAGAGTATTGGTGGAGAGATTGAAAGGGTTTATAGCGGAGGAGTCGTGGATGTTGCAAAACGACGATGAGAGAGCCGAGGAGAAGAGGAGGAGAGTGGAAGAGGAGATAGAGGTGGTGGATGAAGCTTGGAGAGATGGGATTGTTCACTTGATTGGACAAAATGAGGTTGTGGCAAGCAAAGGGTCAGGCTTAGCCAAAAGGGTTTTGATCAATTATGCATATAATGCATTGAGGAGAAACTTGAGACAAAGTGAAGAGGTCTTTTACATTCCTCGCAAGCGTATGCTCAAAGTGGGAATGACTTATGAGCTTTAG 2238 48.35 MEVDRTANNFPDLQESSDDSSPKLAERKLRRNDSLDVESRTVPGAGAGGHAHKGFVLLFRVSGKAAAASWGVILHLAFQSVGVVYGDIGTSPLYVYASTFTDGIKHNDDVLGVLSLILYTLTLIPLLKYVFFVLQANDNGEGGTFALYSLLCRYAKIGLIPSEQVEDQEVSNFQVELPTNRQRMASCLKSKLENSRAAKIFLLFATMLGTSMVIGDGVLTPSISDKIVWISAAILVCLFMVQRFGTHKVGYSFAPIICIWFALIGGIGFYNFLKFDPAVIKAVNPKYIFDYFKRNKKDAWISLGGVVLAITGTEALFADVGHFTVMSIRLSMCCVAYPALVSAYVGQASFLRKHTDLVSDTFFSSIPGPLYWPTFVVAVLASIVASQAMISGTFSIIQQSLSYGCFPRVKVVHTSSKYEGQVYIPEVNYLLMLACLGVTLGFKDTTRIGNAYGIAVVFVMALTSSFLVLIMIMIWKSHILVIISYVLTIGLLEFFYLSSVLYKFDQGGYLPLAFAGFLMTIMYIWNDVHRRKYYYELEHKISPQKLKDIASLTTVNRVPGLALFYSELVQGIPPIFKHYLANVPTLQRVLVFVSFKSLPISKVPMEERFLFRRVEPNDLNVFRCVVRYGYRDIIHEQESFERVLVERLKGFIAEESWMLQNDDERAEEKRRRVEEEIEVVDEAWRDGIVHLIGQNEVVASKGSGLAKRVLINYAYNALRRNLRQSEEVFYIPRKRMLKVGMTYEL 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44390324 44395507 - Maker00015031 Lcy3g1708 628900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1708 745 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 53 744 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy3g1708 745 MobiDBLite consensus disorder prediction 1 45 - -
Lcy3g1708 745 MobiDBLite consensus disorder prediction 19 37 - -
Lcy3g1708 745 Pfam K+ potassium transporter C-terminal domain 559 745 IPR053952 -
Lcy3g1708 745 Pfam K+ potassium transporter integral membrane domain 76 545 IPR053951 -
Lcy3g1708 745 NCBIfam potassium uptake protein 76 744 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy3g1708 745 Coils Coil 663 683 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0301 Lcy-Chr12:3707833 Lcy3g1708 Lcy-Chr3:44390324 0 dispersed
Lcy3g1708 Lcy-Chr3:44390324 Lcy7g1064 Lcy-Chr7:11363119 1.53E-192 dispersed
Lcy3g1708 Lcy-Chr3:44390324 Lcy3g1709 Lcy-Chr3:44404725 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1708 K03549 - csv:101213493 1297.72