Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1710 ATGAGGAGAAAATACAAAACCCTAAGAACGACGATGAGGAAGAAGATGAAAGGGGCATTAACGAGGCACTTGCAGGTTCAGCTAGGCCAGGTTTCTCTCGCCCCTCTCCACCCCAACCGCGCCTCTTCCGCCGCCTCTTGCTTCCAGGACCTGCCTGAATCTGAAGCTCCCGCCACGGTCAACGGTTCCGATGCTCTCCCCTCCTCGTCTCCTAACTTCGAGGACAGAGACTTCATTCTTAGCCAGGACTTCTTTTGCACCCCTGACTATATCACCCCGGACAATCAAAATATGTTGAATGGTTTGGATTGCAACGAGGAAACCACTCCTTGCCCCAAATCTCCAGAGAAGATCACTACTGTTAAAACGAAGAGAAAAATACATGATGGGCTTTTAGTACATCCTCTGAGTCCAAGTTTGTCTGGCCGTGAACAAGTTGTGGAGCTTGGAAATGACACTTTTGGGACAGATGATGTGGATATGGAGAAAGAGGCAATGGCAATGCCGAAGAAACCAAACTACGTTTCTCAATCAGCAGTTGCTCTACGCTGTCGAGTTATGCCTCCTCCTTGCATGAAGAACCCATACTTGAAAGATGCTTCTGACGTAGGCGTAGACCCATTTGGTAATCAACGAACAAAATGTGCAGGATTTTTTCCTGCACTGTTTAGTGGAGATGGTCTTTCAAGATATCACACTGATTTTCATGAGATAAAGCAAATAGGAACTGGTAATTTTAGCCGCGTCTTCAAGGTATTTAAGAGAATTGATGGTTGCCTGTATGCTGTCAAACAAAGCACAAGACCATTGCATCAAGACGTAGAGAGGAGGCGAGCTTTGATGGAAGTTCAAGCTTTGGCAGCTTTAGGATCTCATGAAAACATTGTTGGTTACTACTCTTCGTGGTTTGAAAATGAGCAACTCTACATTCAAATGGAACTCTGCGATTGTAGCTTATCCATTGGCCAGTATTCTCACCCATTCTCTGAGGCAGATGCGCTGAGAGCCTTGTATCAGATTGCAAAAGCATTGCAGTTTGTGCACGATAAAGGAGTAGCTCATTTAGATGTGAAACCTGACAATATTTATGTCAAAGATGGTGTTTATAAACTTGGTGATTTTGGATGCGCTACTCTTCTTGATAAAAGCCTACCAATTGAGGAGGGTGATGCACGGTATATGCCTCAAGAAATTCTGAATGAGAGATATGATTATCTTGACAAGGTTGATATTTTCTCCTTGGGAGCTGCTATTTATGAGATTGTGCGAGGTTCGACATTGCCACAAGCACATTTCATGAATCTGAAGGAGGGAAAATTGCCGCTCCTTCCTGGTCACTCATTGCAATTTCAAAACTTAATCAAGGCCATGGTGGATCCCGACCCAGCGCGACGGCCTTCGGCGTGGGAAATTCTTGAGAATCCCATATTTGTTAAGGTCAGAAATCATCCAAATTCATAA 1461 44.49 MRRKYKTLRTTMRKKMKGALTRHLQVQLGQVSLAPLHPNRASSAASCFQDLPESEAPATVNGSDALPSSSPNFEDRDFILSQDFFCTPDYITPDNQNMLNGLDCNEETTPCPKSPEKITTVKTKRKIHDGLLVHPLSPSLSGREQVVELGNDTFGTDDVDMEKEAMAMPKKPNYVSQSAVALRCRVMPPPCMKNPYLKDASDVGVDPFGNQRTKCAGFFPALFSGDGLSRYHTDFHEIKQIGTGNFSRVFKVFKRIDGCLYAVKQSTRPLHQDVERRRALMEVQALAALGSHENIVGYYSSWFENEQLYIQMELCDCSLSIGQYSHPFSEADALRALYQIAKALQFVHDKGVAHLDVKPDNIYVKDGVYKLGDFGCATLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGAAIYEIVRGSTLPQAHFMNLKEGKLPLLPGHSLQFQNLIKAMVDPDPARRPSAWEILENPIFVKVRNHPNS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44419570 44424699 - Maker00014622 Lcy3g1710 628902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1710 486 FunFam WEE protein kinase 225 313 - -
Lcy3g1710 486 ProSitePatterns Protein kinases ATP-binding region signature. 241 264 IPR017441 GO:0005524(InterPro)
Lcy3g1710 486 ProSiteProfiles Protein kinase domain profile. 235 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1710 486 MobiDBLite consensus disorder prediction 53 72 - -
Lcy3g1710 486 Gene3D Phosphorylase Kinase; domain 1 225 314 - -
Lcy3g1710 486 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 38 473 IPR050339 GO:0004672(PANTHER)|GO:0004713(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Lcy3g1710 486 Gene3D Transferase(Phosphotransferase) domain 1 315 481 - -
Lcy3g1710 486 Pfam Protein kinase domain 235 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1710 486 SUPERFAMILY Protein kinase-like (PK-like) 228 481 IPR011009 -
Lcy3g1710 486 FunFam Wee1-like protein kinase 314 481 - -
Lcy3g1710 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1710 486 SMART serkin_6 235 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1710 Lcy-Chr3:44419570 Lcy11g1664 Lcy-Chr11:40505234 3.58E-21 dispersed
Lcy3g1710 Lcy-Chr3:44419570 Lcy13g0324 Lcy-Chr13:3526403 3.31E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65796 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1710 K06632 - csv:101213255 866.3