Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1712 ATGGCGGCGGTGAAGGTGTACGGTTCGCCGATTTCGACATGCACATGTCGGGTGTTGATTTGCCTCCATGAAAAGCAAGTCCAGTTTGAGCTTCTTCATGTCAATCTCTTCAATGCTGAACACAAGCTGCCCCCATTTTTGGCTAAGAATCCCTTTGGCCAGATTCCAGTCCTAGAAGATGGTGATCTCACCCTATTTGAATCAAGAGCAATCACATCGTACATAGCGGACGAGTACAAGGAAACGGGGTCAGATCTCCTCCTACAGCAGCAGAGCCCCAAAGAGTCCGCCATTGTGAAGCTGTGGGTGGAGGTGGAGTCCCACCATTACAGCCCTGCAATCACTCCCATCATCCACGAGTTCTTCACCGCCCACCTTCAAGGCCACGAGCCCGACCGAGCCCTCATCGACCGGAACTTGGAGCGTCTAGCCGCCGTTCTCGACGTCTACTAG 453 53.2 MAAVKVYGSPISTCTCRVLICLHEKQVQFELLHVNLFNAEHKLPPFLAKNPFGQIPVLEDGDLTLFESRAITSYIADEYKETGSDLLLQQQSPKESAIVKLWVEVESHHYSPAITPIIHEFFTAHLQGHEPDRALIDRNLERLAAVLDVY 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44436669 44438897 + Maker00014369 Lcy3g1712 628904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1712 150 SFLD Glutathione Transferase (cytosolic) 5 149 IPR040079 -
Lcy3g1712 150 Pfam Glutathione S-transferase, N-terminal domain 3 76 IPR004045 -
Lcy3g1712 150 SUPERFAMILY GST C-terminal domain-like 74 150 IPR036282 -
Lcy3g1712 150 Gene3D - 89 150 - -
Lcy3g1712 150 FunFam Glutathione S-transferase F2 3 87 - -
Lcy3g1712 150 CDD GST_N_Phi 3 77 - -
Lcy3g1712 150 SFLD Main (cytGST) 5 149 - -
Lcy3g1712 150 SUPERFAMILY Thioredoxin-like 2 83 IPR036249 -
Lcy3g1712 150 Gene3D Glutaredoxin 2 87 - -
Lcy3g1712 150 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Lcy3g1712 150 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 150 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1712 Lcy-Chr3:44436669 Lcy3g1715 Lcy-Chr3:44460973 2.28E-45 dispersed
Lcy3g1712 Lcy-Chr3:44436669 Lcy3g1714 Lcy-Chr3:44458063 5.34E-44 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1712 K00799 - gmx:100815147 204.912