Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1714 ATGGCGACCATCAAGGTCCATGGAAGCCCCATCTCCACTGCCACAGCCAGAGTCCTCGCTTGTCTCTACGAGAAAGACCTCGATTACGACCTCGTTCTTCTGGACATGAAGAATAACGAACACAAGAAAGAGCCCTTCCTCTCCATCAATCCGTTTGGTCAAGTTCCTGGGTTTCAAGATGGGGATCTCACCATTTTCGAATCAAGGGCCATTACTCAATACTTGGCTCGAACCTACGCCAACAAGGGAAACAAATTGATCCCGGACGACCCAAAGAAAGCAGCAATCGTATCAATGTGGATCGAAGTAGAGGGCCACCACTATGATCCACCGGGAGTGGCGCTGTCGTACGAGCATCTTGTCAAGCCAATATTCGGGCTCGGTGTAACTGATCCTGCAATGGTGGCAGAGAACGAAGCGAAGCTTGGGAAAGTTCTTGACGTCTACGAGAATCAGCTGAGCAAATCCAAGTTCTTGGCTGGCGATGAGTTCAGTCTGGCAGATTTGCACCATATTCCTAATGTGAGCTACTTGTTGGCGACGCCATCCAAGAAGCTGTTCGAATCACGACCGCACGTTAATGCTTGGGTGATCGAGATCACTGCAAGGCCTTCGTGGGCTAAGGTTGTTGCCTTGCGCAGTCAGAGTTGA 651 50.38 MATIKVHGSPISTATARVLACLYEKDLDYDLVLLDMKNNEHKKEPFLSINPFGQVPGFQDGDLTIFESRAITQYLARTYANKGNKLIPDDPKKAAIVSMWIEVEGHHYDPPGVALSYEHLVKPIFGLGVTDPAMVAENEAKLGKVLDVYENQLSKSKFLAGDEFSLADLHHIPNVSYLLATPSKKLFESRPHVNAWVIEITARPSWAKVVALRSQS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44458063 44460956 + Maker00015158 Lcy3g1714 628906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1714 216 Gene3D Glutaredoxin 1 87 - -
Lcy3g1714 216 CDD GST_C_Phi 92 210 IPR034347 -
Lcy3g1714 216 SUPERFAMILY Thioredoxin-like 1 88 IPR036249 -
Lcy3g1714 216 FunFam Glutathione S-transferase F2 3 87 - -
Lcy3g1714 216 Pfam Glutathione S-transferase, C-terminal domain 132 204 IPR004046 -
Lcy3g1714 216 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Lcy3g1714 216 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 215 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Lcy3g1714 216 FunFam Glutathione S-transferase F2 88 210 - -
Lcy3g1714 216 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 216 IPR010987 -
Lcy3g1714 216 Gene3D - 90 214 - -
Lcy3g1714 216 SFLD Glutathione Transferase (cytosolic) 1 212 IPR040079 -
Lcy3g1714 216 SFLD Main.5: Phi-like 1 212 - -
Lcy3g1714 216 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Lcy3g1714 216 SUPERFAMILY GST C-terminal domain-like 74 212 IPR036282 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1714 Lcy-Chr3:44458063 Lcy3g1722 Lcy-Chr3:44508158 1.89E-108 dispersed
Lcy3g1712 Lcy-Chr3:44436669 Lcy3g1714 Lcy-Chr3:44458063 5.34E-44 proximal
Lcy3g1714 Lcy-Chr3:44458063 Lcy3g1715 Lcy-Chr3:44460973 2.45E-101 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1714 K00799 - csv:101212771 403.675