Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1715 ATGGCCAGCCCCATCAAAGTCCATGGAGTCCCCCTCTCCACACCCACATGTAGAGTTCTGGCTTGTCTCTACGAGAAGGAGCTCGAATTCGAGTTTGTCAATGTCAAAATGCACCAAGGGGAACACAAGCAACAGCCCTTCCTCTCCATCAATCCCTTCGGTCAAGTCCCTGGTTTCCAAGATGGAGATTTGACGCTTTTTGAATCTCGAGCAATCACAAAGTACATATCGGAAAATTATGGTGGCAATGGAAGTCAGTTGATTTCTGAAGACCCCAAGAAAGCTGCGATGATTTGGACGTGGATTGAGGTGGAAAGCCACCATTTTGACCCACCGGCGTCGAAGCTGCTGTTCGAGATCGGGTTGAAGCCTATGCTGGGGTGGGGCGAGACAGATGCTGCAGTGGTTGAGCAAAAGGAAGGTGAGTTAGCCAAAGTTCTTGATATCTATGAGAATAGGCTGGCTCAGTCCAAGTACTTGGCAGGGGAGTCCTTCACTTTGGCTGATCTGCACCATCTCCCAACTTTGAACTTCTTGTTGGGGACACAGACCAAGAAACTGTTTGAGTCTCGGCCCCATGTCAATGCGTGGGCGGCTGATATCTTGGCCAGGCCTGCTTGGGCTAAGGTGCTTGCTCTGCGCAAGTAA 648 50.46 MASPIKVHGVPLSTPTCRVLACLYEKELEFEFVNVKMHQGEHKQQPFLSINPFGQVPGFQDGDLTLFESRAITKYISENYGGNGSQLISEDPKKAAMIWTWIEVESHHFDPPASKLLFEIGLKPMLGWGETDAAVVEQKEGELAKVLDIYENRLAQSKYLAGESFTLADLHHLPTLNFLLGTQTKKLFESRPHVNAWAADILARPAWAKVLALRK 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44460973 44462619 - Maker00013810 Lcy3g1715 628907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1715 215 Pfam Glutathione S-transferase, N-terminal domain 4 77 IPR004045 -
Lcy3g1715 215 SFLD Main.5: Phi-like 4 213 - -
Lcy3g1715 215 SUPERFAMILY GST C-terminal domain-like 75 214 IPR036282 -
Lcy3g1715 215 FunFam Glutathione S-transferase F2 4 88 - -
Lcy3g1715 215 SFLD Main (cytGST) 4 213 - -
Lcy3g1715 215 Gene3D - 91 215 - -
Lcy3g1715 215 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 214 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Lcy3g1715 215 SUPERFAMILY Thioredoxin-like 4 84 IPR036249 -
Lcy3g1715 215 Pfam Glutathione S-transferase, C-terminal domain 117 205 IPR004046 -
Lcy3g1715 215 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 215 IPR010987 -
Lcy3g1715 215 CDD GST_N_Phi 4 79 - -
Lcy3g1715 215 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 84 IPR004045 -
Lcy3g1715 215 Gene3D Glutaredoxin 3 88 - -
Lcy3g1715 215 FunFam Glutathione S-transferase F2 89 211 - -
Lcy3g1715 215 CDD GST_C_Phi 93 211 IPR034347 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1875 Lcy-Chr13:37656611 Lcy3g1715 Lcy-Chr3:44460973 4.16E-60 dispersed
Lcy3g1712 Lcy-Chr3:44436669 Lcy3g1715 Lcy-Chr3:44460973 2.28E-45 dispersed
Lcy3g1715 Lcy-Chr3:44460973 Lcy3g1717 Lcy-Chr3:44478755 4.61E-136 dispersed
Lcy3g1714 Lcy-Chr3:44458063 Lcy3g1715 Lcy-Chr3:44460973 2.45E-101 tandem
Lcy3g1715 Lcy-Chr3:44460973 Lcy3g1716 Lcy-Chr3:44468970 1.08E-130 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1715 K00799 - csv:101212536 359.762