Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1716 ATGGGAATTGAAACGGAAGGCGAGGACGAGGACGATGAAAGGAAAGCTATCCCCGTCCCTGCCCCATGGACATCTTTACTTGTTTTTGAAACCTACCAAATGCAACCTCCAACTAAGATGAATAATCTTCCTTTTGTGAATCCAACAGCCAAAGCTTTAATGGCCAGCCCGATCAAAGTCCATGGAGTTCCCCTTTCCAGAGCCACATGTAGGGTTCTAGTTTGTCTGTACGAGAAAGAGCTCGAGTTCGAGTTTGTCAATGTCAAAATGCGCCAAGACGAACATAAGAAACAGCCTTTCCTCTCAATCAATCCCTTTGGACAAATTCCCGGGTTCCATGATGGAGATTTTACGCTTTTCGAATCCAGGGCAATCACGAAGTACATTTCGGAAAATTATGCTGATAATGGAATCCAGTTGATTTTTCGAGACCCGAAGAAAGCAGCGACGATATCGGCGTGGATCGAGGTGGAAAGCCACCATTTTGACCCACCAGCCACGAAACTAGTGTTTGAGCTTTGCTTGAATCCCATGTTTGGGTGGGGTGAGACAAATGATAAAGTGGTTGAGCAAAGTGAAGGCGAATTAGCCAAAGTTCTTGACATCTATGAGAATAAGCTGGCTGAGTCCAAATATTTGGCAGGCGAGTCCTTGAGTTTAGCTGATCTGCACCATCTCCCAAGCTTAGGCTACTTGTTGGGGACACGGTCTAAGAAGCTGTTTGAATCTCGGCCCCATGTCAATGCCTGGGTGGTTGACATCATGGCTAGACCAGCTTGGGCTAAGGTGCTTGCTTTGCGCAACTAA 807 46.47 MGIETEGEDEDDERKAIPVPAPWTSLLVFETYQMQPPTKMNNLPFVNPTAKALMASPIKVHGVPLSRATCRVLVCLYEKELEFEFVNVKMRQDEHKKQPFLSINPFGQIPGFHDGDFTLFESRAITKYISENYADNGIQLIFRDPKKAATISAWIEVESHHFDPPATKLVFELCLNPMFGWGETNDKVVEQSEGELAKVLDIYENKLAESKYLAGESLSLADLHHLPSLGYLLGTRSKKLFESRPHVNAWVVDIMARPAWAKVLALRN 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44468970 44473143 - Maker00015265 Lcy3g1716 628908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1716 268 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 56 137 IPR004045 -
Lcy3g1716 268 SFLD Main (cytGST) 57 265 - -
Lcy3g1716 268 Pfam Glutathione S-transferase, C-terminal domain 177 258 IPR004046 -
Lcy3g1716 268 SUPERFAMILY GST C-terminal domain-like 128 266 IPR036282 -
Lcy3g1716 268 PANTHER GLUTATHIONE S-TRANSFERASE RHO 54 266 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Lcy3g1716 268 SUPERFAMILY Thioredoxin-like 56 137 IPR036249 -
Lcy3g1716 268 SFLD Main.5: Phi-like 57 265 - -
Lcy3g1716 268 CDD GST_C_Phi 146 264 IPR034347 -
Lcy3g1716 268 CDD GST_N_Phi 57 132 - -
Lcy3g1716 268 FunFam Glutathione S-transferase F2 143 264 - -
Lcy3g1716 268 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 144 268 IPR010987 -
Lcy3g1716 268 FunFam Glutathione S-transferase F2 57 141 - -
Lcy3g1716 268 Gene3D - 144 268 - -
Lcy3g1716 268 Gene3D Glutaredoxin 57 141 - -
Lcy3g1716 268 Pfam Glutathione S-transferase, N-terminal domain 57 130 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1716 Lcy-Chr3:44468970 Lcy3g1722 Lcy-Chr3:44508158 1.11E-118 dispersed
Lcy3g1715 Lcy-Chr3:44460973 Lcy3g1716 Lcy-Chr3:44468970 1.08E-130 tandem
Lcy3g1716 Lcy-Chr3:44468970 Lcy3g1717 Lcy-Chr3:44478755 3.98E-130 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1716 K00799 - csv:101212291 327.405