Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1717 ATGGGCAGCCTCATCAAAGTCCATGGAGTCCCCATTTCCACAGCCACATGCAGGGTTCTAGCTTGTCTCTACGAGAAGGAGCTCGAATTCGAGTTTGTCAATGTTAAAATGCACGAAGGAGAACATAAGAAACAGCCCTTCCTCTCCTCCTTCAATCCCTTTGGTCAAGTTCCTGGTTTCCAAGATGGAGATTTGACACTTTTTGAATCCCGAGCAATCACGCAGTACATCTCGAAAAATTACTCTAATAATGGAACCCAGTTGATTTCCCAAGACCCCAAGGAAGCAGCAACTGTATTAACATGGATTGAGGTAGAGAGCCATCATTTTGACCCACCAGCACTGAAACTAGTGTTCGAGCTGTGCTTGAATCCCATGTTTGGGTGGGGTGAGACAAATGCAACAGTGGTTGAGCAAAAGGAAGCTGAGTTAGCCAAAGTTCTTGATATCTATGAGAACAGGCTGGCTGAGTCCAAGTACTTGGCAGGGGAGTCCTTCACTTTGGCTGATCTGCACCATCTCCCAACCTTAGGGTTCTTGTTGGGGACACAGACCAAGAAACTGTTTGAATCTCGGCCCCATGTCAATGCGTGGGCGGCTGATATCATGGCCAGGCCAGCTTCGGCAAAGGTGCTTGCTTTGCGCAACTAA 651 47.77 MGSLIKVHGVPISTATCRVLACLYEKELEFEFVNVKMHEGEHKKQPFLSSFNPFGQVPGFQDGDLTLFESRAITQYISKNYSNNGTQLISQDPKEAATVLTWIEVESHHFDPPALKLVFELCLNPMFGWGETNATVVEQKEAELAKVLDIYENRLAESKYLAGESFTLADLHHLPTLGFLLGTQTKKLFESRPHVNAWAADIMARPASAKVLALRN 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44478755 44480344 - Maker00015134 Lcy3g1717 628909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1717 216 SUPERFAMILY Thioredoxin-like 5 85 IPR036249 -
Lcy3g1717 216 PANTHER GLUTATHIONE S-TRANSFERASE RHO 6 214 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Lcy3g1717 216 SUPERFAMILY GST C-terminal domain-like 76 214 IPR036282 -
Lcy3g1717 216 Pfam Glutathione S-transferase, N-terminal domain 8 78 IPR004045 -
Lcy3g1717 216 Pfam Glutathione S-transferase, C-terminal domain 114 206 IPR004046 -
Lcy3g1717 216 FunFam Glutathione S-transferase F2 90 212 - -
Lcy3g1717 216 Gene3D Glutaredoxin 4 89 - -
Lcy3g1717 216 SFLD Glutathione Transferase (cytosolic) 5 213 IPR040079 -
Lcy3g1717 216 SFLD Main.5: Phi-like 5 213 - -
Lcy3g1717 216 CDD GST_N_Phi 5 80 - -
Lcy3g1717 216 FunFam Glutathione S-transferase F2 4 89 - -
Lcy3g1717 216 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 85 IPR004045 -
Lcy3g1717 216 CDD GST_C_Phi 94 212 IPR034347 -
Lcy3g1717 216 Gene3D - 92 216 - -
Lcy3g1717 216 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 216 IPR010987 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1715 Lcy-Chr3:44460973 Lcy3g1717 Lcy-Chr3:44478755 4.61E-136 dispersed
Lcy3g1717 Lcy-Chr3:44478755 Lcy3g1722 Lcy-Chr3:44508158 9.73E-125 dispersed
Lcy3g1716 Lcy-Chr3:44468970 Lcy3g1717 Lcy-Chr3:44478755 3.98E-130 tandem
Lcy3g1717 Lcy-Chr3:44478755 Lcy3g1718 Lcy-Chr3:44486176 1.99E-104 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1717 K00799 - csv:101212536 353.984