Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1718 ATGTGTGTAGAATCCCGAGCAATCACGCAGTACATCTCGAAAAAATACGCTAATAATGGAACCCAGTTGATTTCCCAAGACCCCAAGGAAGCAGCAACTGTATTAACATGGATTGAGGTAGAGAGCCATCATTTTGACCCACCAGCACTGAAACTAGTGTTCGAGCTCTGCTTGAATCCCATGTTTGGGTGGGGTGAGACAAATGCAACAGTGGTTGAGCAAAAGGAAGCTGAGTTAGCCAAAGTTCTTGATATCTATGAGAACAGGCTGGCTGAGTCCAAGTACTTGGCAGGGGAGTCCTTCACTTTGGCTGATCTGCACCATCTCCCAACCTTAGGGTTCTTGTTGGGGACACAGACCAAGAAACTGTTTGAATCTCGGCCCCATGTCAATGCGTGGGCGGCTGATATCATGGCCAGGCCAGCTTCGGCAAAGGTGCTTGCTTTGCGCAACTGA 456 48.68 MCVESRAITQYISKKYANNGTQLISQDPKEAATVLTWIEVESHHFDPPALKLVFELCLNPMFGWGETNATVVEQKEAELAKVLDIYENRLAESKYLAGESFTLADLHHLPTLGFLLGTQTKKLFESRPHVNAWAADIMARPASAKVLALRN 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44486176 44486631 - Maker00014598 Lcy3g1718 628910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1718 151 Gene3D - 27 151 - -
Lcy3g1718 151 Pfam Glutathione S-transferase, C-terminal domain 49 141 IPR004046 -
Lcy3g1718 151 CDD GST_C_Phi 29 147 IPR034347 -
Lcy3g1718 151 FunFam Glutathione S-transferase F2 25 147 - -
Lcy3g1718 151 SFLD Main (cytGST) 3 140 - -
Lcy3g1718 151 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 27 151 IPR010987 -
Lcy3g1718 151 PANTHER GLUTATHIONE S-TRANSFERASE RHO 3 149 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Lcy3g1718 151 SFLD Glutathione Transferase (cytosolic) 3 140 IPR040079 -
Lcy3g1718 151 SUPERFAMILY GST C-terminal domain-like 11 149 IPR036282 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1718 Lcy-Chr3:44486176 Lcy13g1039 Lcy-Chr13:22711472 6.59E-29 dispersed
Lcy3g1718 Lcy-Chr3:44486176 Lcy3g1722 Lcy-Chr3:44508158 2.41E-82 proximal
Lcy3g1717 Lcy-Chr3:44478755 Lcy3g1718 Lcy-Chr3:44486176 1.99E-104 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1718 K00799 - csv:101212536 242.662