Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1722 ATGGTAACAGCCAGGCGTGGCGAAGTCCGAACTTGCGGACCAATAATCGAACAGCGTCATTTCATTTGCCCGTCTATGGCGATCAAAGTCCACGGAATCCCAGCTTCCACAGCCACTTGTAGGGTTCTTGCTGCCCTCTACGAGAAGGGGCTTCAATTCGAGCTTGTTAATGTCAAATTGCACGAAGGGGAACACAAGAGAGAGCCCTTCATCTCGATCAATCCGTTCGGTCAAGTTCCTGGGTTCCACGATGGAGATCTGACGCTTTTTGAATCCAGAGCAATCACGCAGTACATCTCGGGAAATTACGCTAGTAATGGAACCCAGTTGATTTCCCAAGACCCCAAGAAAGCAGCCGTGGTATTAACATGGATCGAGGCCGAGAGCCACCATTTCGACCCAGTAGCCATGAAACTGGTCTTCGAGCACTGCTTGAAGCCACTTTTTGGCTTGGGAGATGCAGATTCTGCAGTGGTCGAACAAAACGAGGCTGAGTTAGGCAAAGTTCTTGATATCTACGAGAATAGGCTGTCCGAATCCAAATACTTGGGAGGAGATTCCTTCAGTTTGGCTGATCTGCACCATCTCCCAGTATTAGGCTACCTGTTGGGAACACCATCCAAGAAACTGTTTGAATCACGGCCCCATGTCAATGCTTGGGTGGCTGATATCACAGCCAGGCCGGCTTGGGCTAAGGTACTTGCTCTACGCAACTAA 717 49.79 MVTARRGEVRTCGPIIEQRHFICPSMAIKVHGIPASTATCRVLAALYEKGLQFELVNVKLHEGEHKREPFISINPFGQVPGFHDGDLTLFESRAITQYISGNYASNGTQLISQDPKKAAVVLTWIEAESHHFDPVAMKLVFEHCLKPLFGLGDADSAVVEQNEAELGKVLDIYENRLSESKYLGGDSFSLADLHHLPVLGYLLGTPSKKLFESRPHVNAWVADITARPAWAKVLALRN 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44508158 44509555 + Maker00014856 Lcy3g1722 628914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1722 238 CDD GST_C_Phi 116 234 IPR034347 -
Lcy3g1722 238 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 26 107 IPR004045 -
Lcy3g1722 238 Pfam Glutathione S-transferase, N-terminal domain 26 100 IPR004045 -
Lcy3g1722 238 CDD GST_N_Phi 27 100 - -
Lcy3g1722 238 FunFam Glutathione S-transferase F2 27 111 - -
Lcy3g1722 238 Gene3D Glutaredoxin 26 111 - -
Lcy3g1722 238 FunFam Glutathione S-transferase F2 112 234 - -
Lcy3g1722 238 SUPERFAMILY GST C-terminal domain-like 98 236 IPR036282 -
Lcy3g1722 238 PANTHER GLUTATHIONE S-TRANSFERASE RHO 26 236 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Lcy3g1722 238 SFLD Main.5: Phi-like 26 235 - -
Lcy3g1722 238 SFLD Main (cytGST) 26 235 - -
Lcy3g1722 238 SUPERFAMILY Thioredoxin-like 24 107 IPR036249 -
Lcy3g1722 238 Gene3D - 114 238 - -
Lcy3g1722 238 Pfam Glutathione S-transferase, C-terminal domain 140 228 IPR004046 -
Lcy3g1722 238 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 114 238 IPR010987 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1714 Lcy-Chr3:44458063 Lcy3g1722 Lcy-Chr3:44508158 1.89E-108 dispersed
Lcy3g1716 Lcy-Chr3:44468970 Lcy3g1722 Lcy-Chr3:44508158 1.11E-118 dispersed
Lcy3g1717 Lcy-Chr3:44478755 Lcy3g1722 Lcy-Chr3:44508158 9.73E-125 dispersed
Lcy3g1718 Lcy-Chr3:44486176 Lcy3g1722 Lcy-Chr3:44508158 2.41E-82 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1722 K00799 - csv:101212291 375.941