Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1771 ATGTACAGAGCTCAAATCCCTTCAAATCCCGCCTCCATTTCCGCCATTTTCACCTTCTTCTTCATCTTCTTCCTCTTCTCTTCCAAACCCATTTCTTCGAATCCCCAAATTCACCAGACAGCTCTCACCCTCTGCAATGGCACTCTGTACCCACACCTCTGTTTCTCAAAACTTACCTCTTTCCCCGAATTGGCCTCCCTCTCGCCGGAAAAGCTCGCCAGCAGCGCCCTCAACTTCACCGACGCCGAGATCCACGGCGCCTACGCCAATTGCACCAAGCTCAAGACCCTCCTCTACGGCAGTCTCAATCCCACCGACCGCCGCGCTCTCGATGACTGTCTCGAGCTTCTCGACGGCAGTATTGCTGAGCTCGAAACTTCGATTTCCGATCTGGCGCCGTCGCAGTCCGCCGCCAGCCACTCCCACGATCTGTTGACGTTGGTCAGCGCCGCCATGACCAACCACCGGACTTGTATTGATGGATTTTACAACAGTTCCGGGACTGTGAGGAGCCGGGTGGAGCTGTATTTGGGGAAAATTGAACAGCATTTGAGTATTGATTTGGCAATGTTGAAGAAAATCCCTGGAGTTAATCGGGCTACGGCGGCGGAGGAGGTGTTGCCGGAGTATGGGGCGGTGAGGGGTGGGTTTCCGATGTGGGTTTCGGTTAAGGATCGGAGACTGTTGCAGGCGGCGGTGAATGAGACGAAGTTTGATTTGGTGGTGGCGAAGGACGGCTCCGGGAATTTCACCACCGTTGGTGAAGCAGTCGCCGCCGCTCCGAATTCGAGCACCACCAGGTTTGTAATATACATAAAAGCAGGAGCTTATTTTGAGAATGTGGAAATAGAAAGGAAAAAGACAAACTTGATGTTCGTCGGCGACGGGATCGGAAAAACGCTGATAAAGGGCAACCGGAACGTTGTCGACGGCTGGACTACTTTCCGGTCAGCCACTGTCGCGGCGGTTGGCAGCGGGTTCATAGCCAAAGGCATAACCTTTGAAAACTTCGCCGGTCCGAGCAAGCACCAAGCCGTAGCCTTAAGAAGCAACTCCGACTTCTCGGCATTTTACCAATGCAGCTTCATCGGCTATCAAGACACTCTCTACGTCCACTCCCTCCGCCAATTCTACCGTGAATGCGACGTCTACGGCACCATCGACTTCATCTTCGGCAACGCCGCTGTCGTCTTCCAAAACTGCAACCTCTACGCCCGAAAACCCAACTCCAACCAACGCAACATATTCACCGCTCAGGGCCGTGAGGACCCCAACCAGAACACCGGAATTTCAATCCTCAATTGCAAGGTTGAAGCTGCCTCCGATTTGATCCCGGTTCTTTCCTCGTTTAAGACTTACTTGGGCCGCCCTTGGAAGTTGTACTCGAGAACGGTTTTTCTCCGATCGTTTATTGGGCAGTTGGTCGACCCGGCCGGGTGGCTTGAGTGGAATGGGACGTTTGCGTTGGATACTTTGTATTATGGGGAGTATTTGAACCGGGGGCCAGGTTCGAATACGACCGGACGGGTTACTTGGCCAGGTTATCGGGTGATTACTAACTCGACGGAGGCGAGTCAGTTTACGGTTGAGGCGTTTATACAAGGAACCTCGTGGTTGAACTCGACTGGGATTCCTTTCTTCTCCGGTTTGGCTTGA 1656 53.2 MYRAQIPSNPASISAIFTFFFIFFLFSSKPISSNPQIHQTALTLCNGTLYPHLCFSKLTSFPELASLSPEKLASSALNFTDAEIHGAYANCTKLKTLLYGSLNPTDRRALDDCLELLDGSIAELETSISDLAPSQSAASHSHDLLTLVSAAMTNHRTCIDGFYNSSGTVRSRVELYLGKIEQHLSIDLAMLKKIPGVNRATAAEEVLPEYGAVRGGFPMWVSVKDRRLLQAAVNETKFDLVVAKDGSGNFTTVGEAVAAAPNSSTTRFVIYIKAGAYFENVEIERKKTNLMFVGDGIGKTLIKGNRNVVDGWTTFRSATVAAVGSGFIAKGITFENFAGPSKHQAVALRSNSDFSAFYQCSFIGYQDTLYVHSLRQFYRECDVYGTIDFIFGNAAVVFQNCNLYARKPNSNQRNIFTAQGREDPNQNTGISILNCKVEAASDLIPVLSSFKTYLGRPWKLYSRTVFLRSFIGQLVDPAGWLEWNGTFALDTLYYGEYLNRGPGSNTTGRVTWPGYRVITNSTEASQFTVEAFIQGTSWLNSTGIPFFSGLA 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44975720 44980385 - Maker00015151 Lcy3g1771 628963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1771 551 SMART PMEI_2 37 190 IPR006501 GO:0004857(InterPro)
Lcy3g1771 551 Gene3D - 233 550 IPR012334 -
Lcy3g1771 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 196 IPR035513 -
Lcy3g1771 551 CDD PMEI-like_3 43 196 - -
Lcy3g1771 551 Pfam Pectinesterase 239 535 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy3g1771 551 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Lcy3g1771 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 195 IPR035513 -
Lcy3g1771 551 Pfam Plant invertase/pectin methylesterase inhibitor 43 190 IPR006501 GO:0004857(InterPro)
Lcy3g1771 551 NCBIfam pectinesterase inhibitor domain 13 193 IPR006501 GO:0004857(InterPro)
Lcy3g1771 551 SUPERFAMILY Pectin lyase-like 237 549 IPR011050 -
Lcy3g1771 551 PANTHER PECTINESTERASE 15 541 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy3g1771 551 FunFam Pectinesterase 233 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0133 Lcy-Chr12:1659503 Lcy3g1771 Lcy-Chr3:44975720 6.46E-171 dispersed
Lcy3g1771 Lcy-Chr3:44975720 Lcy3g2282 Lcy-Chr3:49654900 3.02E-168 dispersed
Lcy3g1771 Lcy-Chr3:44975720 Lcy3g1772 Lcy-Chr3:45000358 3.89E-136 tandem
Lcy1g0429 Lcy-Chr1:3790912 Lcy3g1771 Lcy-Chr3:44975720 1.65E-149 transposed
Lcy6g2382 Lcy-Chr6:48596680 Lcy3g1771 Lcy-Chr3:44975720 6.22E-158 transposed
Lcy7g0539 Lcy-Chr7:4780217 Lcy3g1771 Lcy-Chr3:44975720 8.26E-142 transposed
Lcy12g0753 Lcy-Chr12:9638380 Lcy3g1771 Lcy-Chr3:44975720 3.47E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1771 K01051 - csv:101205557 964.14