Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1772 ATGGCGGCCGGGCCCACCACCGCATTCTATTCTCTCATCCTCCTCTTCCTCTACCTCTACCTCACCACCTCCGCCGCCACCCCTCTGCCGCCCCCCACCGGATCGGTCTGCAGCTCGACCCCAGACCCCTCCTACTGCAAATCGGCCCTCCCGAACCAGACCGGCAATGTGTACTCGTACGGGCGGTCGTCGGTGAGAAAATCGCTGTCGTCGTCGCAGAAGTTCCTCCGGCTGGTCCAGAAGTACCTCCGGTCGAGGTCGTCGCTGACGGTGGCGGCGGTGAGGGCCCTGGAGGACTGCCAGCTGCTGGCGGGACTGAACATCGACTACTTGACGACGTCGTTCCGGACGGTGAATACGACGAGCAGGACGCTGCCGGAGATGAAGGCGGACGACGTTCAGAGTTTGCTGAGTGCGATATTGACGAATCAGCAGACTTGCTTGGATGGGCTTAAGGCTACGGCGGGTTCTTGGTCTGTCAAAAATGGCCTTTCCCTCCCACTTGCCGCTGACACCAAGCTCTACTCAATGTCTTTGGCCTTATTTACTAAAGGTTGGGTTCCAAAGAAGAAGAAAAGGCCGACATGGAAGGCCGCCGGAAGACAGGGCGGGTTCAGAAACGGACGAATGTCACTCAAAATGTCGAGCAGAACCCAAGCGATCTACGAGACGGCGACTCGCCGGCATCTGCTGCAGACTGACGACGGCGGCGACGACCAGATTTCGGTGAGGGACATCGTCGTCGTCAGCCAAGACGGCACCGGAAATTTCACAACCATCAATGAAGCGATTGCGGCGGCGCCGAACAACTCTGCTCCGACCGATGGCTATTTCTTGATCTTCGTGTCGGCCGGAGTTTATGAAGAATACGTGTTGATCGCGAAGAACAAAAGGTACTTGATGATGATCGGAGATGGCATCAATCAGACCGTTATCACCGGTAATCGGAGCGTCGTTGACGGCTGGACCACTTTCAATTCCGCCACGTTTGCGGTGGTGGGACCCGGATTCGTCGCAGTAAACATGACATTCAGAAACACCGCCGGAGCAATCAAGCACCAGGCCGTCGCCGTCCGTAACGGCGCCGACTTATCCACCTTCTACCTCTGCAGCTTCGAAGCCTACCAAGACACCTTATACACCCACTCCCTCCGCCAATTCTACCGCGACTGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAACATCTACCCCCGCCTTCCCATGCCCAACCAGTTCAACGCCATCACCGCCCAGGGCCGGACCGACCCCAACCAGAACACCGGCACCTCCATCCACAACTGCCGGATCACCGCCGCCGACGACCTCGCCAACAACACCGGCGCCGCCGTCAAGACCTTCCTCGGGCGGCCGTGGAAGGAGTACTCGAGGACGGTGTATCTGCAGAGCTTCATGGATGATTTGATTAATCCGGCGGGGTGGAGGGCTTGGGACGGGGATTTTGCTCTGAACACTTCGTATTATGCGGAGTTTGGGAATTTCGGGCCGGGATCCAACACGTCGGAGAGGGTGACTTGGCCGGGATTTCATTTGATCAATGATACCGATGCTGGGAATTTCACGGCGGCGAACTTTGTGTTGGCGGACGATTGGCTGCCGCAGACCGGAGTTCCGTACACCAGCGGCTTGACGGAGTAG 1689 58.14 MAAGPTTAFYSLILLFLYLYLTTSAATPLPPPTGSVCSSTPDPSYCKSALPNQTGNVYSYGRSSVRKSLSSSQKFLRLVQKYLRSRSSLTVAAVRALEDCQLLAGLNIDYLTTSFRTVNTTSRTLPEMKADDVQSLLSAILTNQQTCLDGLKATAGSWSVKNGLSLPLAADTKLYSMSLALFTKGWVPKKKKRPTWKAAGRQGGFRNGRMSLKMSSRTQAIYETATRRHLLQTDDGGDDQISVRDIVVVSQDGTGNFTTINEAIAAAPNNSAPTDGYFLIFVSAGVYEEYVLIAKNKRYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMPNQFNAITAQGRTDPNQNTGTSIHNCRITAADDLANNTGAAVKTFLGRPWKEYSRTVYLQSFMDDLINPAGWRAWDGDFALNTSYYAEFGNFGPGSNTSERVTWPGFHLINDTDAGNFTAANFVLADDWLPQTGVPYTSGLTE 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45000358 45004878 + Maker00014134 Lcy3g1772 628964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1772 562 Pfam Pectinesterase 247 544 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy3g1772 562 Pfam Plant invertase/pectin methylesterase inhibitor 35 181 IPR006501 GO:0004857(InterPro)
Lcy3g1772 562 SUPERFAMILY Pectin lyase-like 245 559 IPR011050 -
Lcy3g1772 562 FunFam Pectinesterase 240 560 - -
Lcy3g1772 562 FunFam Pectinesterase 34 184 - -
Lcy3g1772 562 SMART PMEI_2 28 181 IPR006501 GO:0004857(InterPro)
Lcy3g1772 562 PANTHER PECTINESTERASE 11 551 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy3g1772 562 CDD PMEI-like_3 35 186 - -
Lcy3g1772 562 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Lcy3g1772 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 184 IPR035513 -
Lcy3g1772 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 184 IPR035513 -
Lcy3g1772 562 Gene3D - 241 560 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1772 Lcy-Chr3:45000358 Lcy9g1690 Lcy-Chr9:42119248 1.06E-222 dispersed
Lcy3g1771 Lcy-Chr3:44975720 Lcy3g1772 Lcy-Chr3:45000358 3.89E-136 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1772 K01051 - csv:101205321 1002.66