Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1776 ATGGCTACCGATTCTCATGCCCCTAACCCAAGGGGTCTTCTCTGTAGTGCTGGAGCTGGTGCTGCTGCTGGAGTTCTTGCTGCTACGTTTGTGTGCCCTTTGGATGTCATCAAGACTAGATTTCAGGTTCATGGACTGCCAAATATTGGAAAAGGGAGTCTTATAGTTGGTAGTCTGAAACAAATTGTTCATAAGGAGGGGCTACGTGGAATGTATAGAGGACTCTCACCTACTGTGCTTGCACTACTTCCTAACTGGGCTGTTTATTTCACAATATATGGGCAGCTTAAAAGCTTTCTTGGCTCCGATGATGAAAGTCGTCAGCTTTCAATAGGTGCTAATATGTTGGCTGCTTCTGGTGCTGGGGCTGCTACAACTATTGCAACTAATCCTCTATGGGTAGTTAAGACCAGACTTCAGACGCAGGGAATGAAATCTGGTAGCGCACCATATAGAAATACAGTGTCTGCCTTGAAGAGAATAGCCTATGAAGAAGGCATCCGTGGATTGTACAGGTTCTCTCTTTCGTATCATGTTGCCATTCTGATCTATGTATTTTATATCAAGAAAACAATTACAGTGATTATTGGCTCAACTGTAACACTCGATACCATATTCTACAGTGGTCTTGTGCCCGCTTTGGCTGGTGTAAGTCACGTCGCGATCCAGTTTCCAACATATGAGAAAATAAAAAGTTATTTAGCTGGAAGAGACAATAAGACGACGGATAAACTCAGTGCACGTGATGTTGCGGTTGCTTCATCTGTCTCCAAGATATTTGCTTCCACATTGACCTATCCACATGAGGTTGTACGTTCCAGGCTGCAGGCACAAGGGGTTCACTCTGAGAAGCGCTATTCTGGCGTAACTGATTGCGTAAAGAAAGTATTTCAGCAAGATGGTCTCGCCGGTTTCTATCGAGGATGCGCAACCAACCTTCTTAGGACGACACCTGCAGCTGTCATCACGTTTACCAGCTTTGAGATGATTCACCGTTTTCTTGTCAACTTATTTCCTCACGATCCACATCCACACACGCTATGA 1044 44.64 MATDSHAPNPRGLLCSAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLKQIVHKEGLRGMYRGLSPTVLALLPNWAVYFTIYGQLKSFLGSDDESRQLSIGANMLAASGAGAATTIATNPLWVVKTRLQTQGMKSGSAPYRNTVSALKRIAYEEGIRGLYRFSLSYHVAILIYVFYIKKTITVIIGSTVTLDTIFYSGLVPALAGVSHVAIQFPTYEKIKSYLAGRDNKTTDKLSARDVAVASSVSKIFASTLTYPHEVVRSRLQAQGVHSEKRYSGVTDCVKKVFQQDGLAGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVNLFPHDPHPHTL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45027458 45031324 - Maker00013991 Lcy3g1776 628968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1776 347 SUPERFAMILY Mitochondrial carrier 206 329 IPR023395 -
Lcy3g1776 347 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 173 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(PANTHER)|GO:0055085(InterPro)
Lcy3g1776 347 Pfam Mitochondrial carrier protein 108 172 IPR018108 -
Lcy3g1776 347 Pfam Mitochondrial carrier protein 14 102 IPR018108 -
Lcy3g1776 347 Pfam Mitochondrial carrier protein 250 336 IPR018108 -
Lcy3g1776 347 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 1 105 - -
Lcy3g1776 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 198 IPR018108 -
Lcy3g1776 347 Gene3D Mitochondrial carrier domain 1 193 IPR023395 -
Lcy3g1776 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 333 IPR018108 -
Lcy3g1776 347 Gene3D Mitochondrial carrier domain 204 337 IPR023395 -
Lcy3g1776 347 SUPERFAMILY Mitochondrial carrier 11 172 IPR023395 -
Lcy3g1776 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
Lcy3g1776 347 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085(InterPro)
Lcy3g1776 347 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085(InterPro)
Lcy3g1776 347 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085(InterPro)
Lcy3g1776 347 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085(InterPro)
Lcy3g1776 347 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1474 Lcy-Chr10:38759951 Lcy3g1776 Lcy-Chr3:45027458 1.22E-124 dispersed
Lcy1g0667 Lcy-Chr1:5719264 Lcy3g1776 Lcy-Chr3:45027458 2.15E-49 dispersed
Lcy3g1776 Lcy-Chr3:45027458 Lcy7g0299 Lcy-Chr7:2570993 4.60E-17 dispersed
Lcy3g1776 Lcy-Chr3:45027458 Lcy12g1942 Lcy-Chr12:40775651 2.96E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1776 K15115 - csv:101204681 525.783