Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1779 ATGGCGACGAGGAATCGAACCGCGCAGTTCAGAAGGCACAGGGACGCCGTGAAGAGCGTCCGTGCGCCTTTATCTTCCTCGGCAGCTGGTTCGAGCGGGGAAGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGCTCTTCTTCTTACGCTCCTCTCAGCACTGAAGATCCAGGACCTTCGAGCAGGGATGCATTTATGGTGGGTCTACCTCCAGCTTGGGTGGATGATTCTGAAGAAATAACGGTTAATATACAGCAAATTCGTAGGAAGATGGCAGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCCGATGGCAGAGAAGATCAGCATACAATTGAGGCACTTACGCTAGAGATTACCAATCTTTTGAAAACCTCTGAGAAGAGGTTGAAGAAAATTTCTAGTACTGGATCCTCAGAGGATATGAACATTAGAAAAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCTATGGACCTTCGTAGAAGACAGTCAATGTATCTGAAACGTCTGCAGCAGCAAAAGGAGGGACATGATGGAATTGATTTGGAGATAAATTTGAATGGCAACAAAACTCTACATGAGGATGATGAATATGGTGAATTTGGAACCATTGAAAACCAAACGATGACATTTGGAATTGATGAGCAGCACATCCAGGGAAGGGAGAAAGAGATCAGACAGGTTGTGAAATCAGTAAATGAGCTTGCACAAATTATGAAGGATCTCTCAACCCTTGTCATAGACCAGGGTACCATAGTCGATAGGATCGACCACAATATTCAGAATGTTGCTACAACCGTGGAAGAGGGCTATAAACAGCTTCAGAAGGCGGAGAAGACTCAGAAGGATGGAGGAATGGTGAAGTGTGCAACGGTGCTTGTTATTATGTGTTTCGTAATGCTGGTTCTTTTGATACTCAAGGAGATAATTATGTAA 969 43.76 MATRNRTAQFRRHRDAVKSVRAPLSSSAAGSSGEVIEMVSSSLLRSKRSSSYAPLSTEDPGPSSRDAFMVGLPPAWVDDSEEITVNIQQIRRKMAELVKAHSKALMPSFADGREDQHTIEALTLEITNLLKTSEKRLKKISSTGSSEDMNIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDGIDLEINLNGNKTLHEDDEYGEFGTIENQTMTFGIDEQHIQGREKEIRQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVATTVEEGYKQLQKAEKTQKDGGMVKCATVLVIMCFVMLVLLILKEIIM 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45047568 45052102 + Maker00014565 Lcy3g1779 628971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1779 322 ProSitePatterns Syntaxin / epimorphin family signature. 232 271 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lcy3g1779 322 CDD SNARE_syntaxin16 229 287 - -
Lcy3g1779 322 SMART tSNARE_6 221 288 IPR000727 -
Lcy3g1779 322 MobiDBLite consensus disorder prediction 1 31 - -
Lcy3g1779 322 SUPERFAMILY t-snare proteins 72 281 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lcy3g1779 322 Gene3D - 73 280 - -
Lcy3g1779 322 SMART SynN_4 67 182 IPR006011 GO:0016020(InterPro)
Lcy3g1779 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 226 288 IPR000727 -
Lcy3g1779 322 PANTHER SYNTAXIN 83 307 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy3g1779 322 Pfam SNARE domain 262 314 IPR000727 -
Lcy3g1779 322 FunFam Syntaxin-43 73 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0262 Lcy-Chr10:4233133 Lcy3g1779 Lcy-Chr3:45047568 3.54E-102 dispersed
Lcy3g1779 Lcy-Chr3:45047568 Lcy4g1808 Lcy-Chr4:44108158 2.97E-114 dispersed
Lcy3g1779 Lcy-Chr3:45047568 Lcy13g1039 Lcy-Chr13:22711472 7.85E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1779 K08489 - csv:101204192 563.918