Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g1810 | ATGTCAGCCATGAAAGATACCGGAGCTCTGGACTTCACCGCCGACAAAGTGCTCGCAAAGGAGTTCCTCGCGAACTTCGCCGACGCAAATGGCGAAGCGAAGTACTTAAACATCCTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAATTCAAATCGATCTCGAGGACGTCTTTAATTATAAGGACTTGGACGAGGATTTCCTCAGACGTATTACAGAAAACACTCGGCGATATATTGGAATTTTTGCCGATGCTATTGATGAGCTCATGCCTGAGCCAACAGAGGCGTTTATAGATGACGATCATGACATATTAATGACACAACGGTCTGATGATGGACCGGATACTGTTGATAACACTGACCCACGCCAAAAGATGCCTCCGGAAATTAAACGATACTTCTTTAAAGGGATTCTGTCATTTCCAAATCGCCTTATGCTTGATCATTCTTCGTGCAGTGAAGTTTATATTAGAGCACCTTCAAAGGGTCGTCCATTTACCATAAGAGAGGTCAAGGCATCATATATTGGTCAACTTGTGAGGATATCTGGTATTGTGACACGCTGTTCAGATGTTAAGCCATTGATGCAAGTGGCAGTTTATACATGCGAAGACTGTGGTTTTGAGATATACCAGGAGGTAACAGCTCGAGTCTTCATGCCCCTGTTTGAGTGTCCATCTCAGCGTTGTAGAACAAACCAAACAAAAGGCAACTTAATTCTTCAACTTAGAGCGTCCAAATTTCTGAAGTTTCAGGAGGCCAAAATTCAAGAGTTAGCTGAGCATGTCCCAAAAGGTCATATTCCTCGGACAATGACTGTTCATCTTAGGGGTGAATTAACTAGGAAGGTAGCTCCAGGTGATGTTGTTGAACTATCAGGGATTTTTCTTCCTATTCCTTATACGGGTTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATATGAGGAATATGAACTTAGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCTGAGGATGGTGATATTTACAATAAACTGGCACGATCTTTGGCACCTGAAATTTTTGGGCATGAAGATATTAAAAAAGCTTTACTGCTTCTCCTTGTTGGTGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCACATATGTTTGATGGGCGATCCTGGAGTTGCAAAAAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGAGTCTACACGACTGGCAAAGGTAGCAGTGGTGTTGGTCTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGAGCATTGGTGTTGGCTGACATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATACATGAAGTCATGGAGCAACAGACCGTGAGTATTGCCAAGGCTGGGATCACCACGTCTCTAAATGCCAGGACTGCTGTCCTTGCTGCAGCCAATCCAGCATGGGGAAGATATGACCTACGCAGAACTCCAGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTTGATCTTCTTTGGTTGATCCTAGATCGAGCTGACATGGATAATGATCTTGAAATGGCTAGACATGTTGTTTATGTCCATCAGAATAGAGAATCTCCTGCTCTTGGCTTCACTCCACTTGAATCATCTGTTCTTCGAGCTTATATTTCAGCTGCAAGAAGATTGTCCCCTTACGTTCCCAAGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGTATTCGACAGGAAGAAGCTAAATCTAACACTCCCCATTCATATACCACAGTCAGAACTCTACTAAGCATTCTTCGGATATCAGCTGCTCTAGCAAGGCTTAGATTCTCTGAGACTGTGGTTCAGAGTGATGTCGATGAGGCTCTAAGGTTAATGCAAATGTCAAAATTCTCTCTATACTCGGATGACCGTCAAAAATCTGGTCTAGATTCTATCTCAGATATTTATTCAATCCTGCGTGATGAAGCTGCCAGAACCAATAAAATGGATGTGAGCTATGCACACGCCCTTAACTGGATTTCTAGGAAGGGATACAGCGAAGCTCAACTAAAAGAATGTTTGGAGGAGTATGCAGCCTTGAATGTGTGGCAAATACATCCACACACCTTCGACATTCGGTTTATAGATGCTTGA | 2232 | 43.23 | MSAMKDTGALDFTADKVLAKEFLANFADANGEAKYLNILQEVANRRVRAIQIDLEDVFNYKDLDEDFLRRITENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTVDNTDPRQKMPPEIKRYFFKGILSFPNRLMLDHSSCSEVYIRAPSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVVQSDVDEALRLMQMSKFSLYSDDRQKSGLDSISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA | 743 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 45311503 | 45317519 | + | Maker00014061 | Lcy3g1810 | 629002 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g1810 | 743 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 531 | 539 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy3g1810 | 743 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 480 | 493 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy3g1810 | 743 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 452 | 466 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy3g1810 | 743 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 504 | 516 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy3g1810 | 743 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 392 | 407 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy3g1810 | 743 | FunFam | DNA replication licensing factor MCM7 | 336 | 668 | - | - | |
| Lcy3g1810 | 743 | SUPERFAMILY | Nucleic acid-binding proteins | 19 | 319 | IPR012340 | - | |
| Lcy3g1810 | 743 | SMART | mcm | 164 | 663 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy3g1810 | 743 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 361 | 672 | IPR027417 | - | |
| Lcy3g1810 | 743 | Gene3D | - | 195 | 249 | - | - | |
| Lcy3g1810 | 743 | Pfam | MCM AAA-lid domain | 578 | 661 | IPR041562 | - | |
| Lcy3g1810 | 743 | Gene3D | - | 16 | 106 | - | - | |
| Lcy3g1810 | 743 | Gene3D | - | 336 | 668 | IPR027417 | - | |
| Lcy3g1810 | 743 | FunFam | DNA replication licensing factor MCM7 | 195 | 249 | - | - | |
| Lcy3g1810 | 743 | Pfam | MCM OB domain | 168 | 299 | IPR033762 | - | |
| Lcy3g1810 | 743 | FunFam | DNA replication licensing factor MCM7 | 15 | 106 | - | - | |
| Lcy3g1810 | 743 | CDD | MCM7 | 354 | 661 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Lcy3g1810 | 743 | Pfam | MCM N-terminal domain | 20 | 102 | IPR027925 | - | |
| Lcy3g1810 | 743 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 16 | 713 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006270(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
| Lcy3g1810 | 743 | ProSitePatterns | MCM family signature. | 460 | 468 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Lcy3g1810 | 743 | Pfam | MCM P-loop domain | 339 | 561 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy3g1810 | 743 | Gene3D | - | 168 | 296 | IPR012340 | - | |
| Lcy3g1810 | 743 | ProSiteProfiles | MCM family domain profile. | 351 | 557 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0019 | Lcy-Chr1:184157 | Lcy3g1810 | Lcy-Chr3:45311503 | 1.34E-82 | dispersed | |
| Lcy1g0195 | Lcy-Chr1:1792784 | Lcy3g1810 | Lcy-Chr3:45311503 | 9.88E-96 | dispersed | |
| Lcy3g0984 | Lcy-Chr3:33658553 | Lcy3g1810 | Lcy-Chr3:45311503 | 4.43E-107 | dispersed | |
| Lcy3g1810 | Lcy-Chr3:45311503 | Lcy4g2051 | Lcy-Chr4:47083917 | 3.10E-90 | dispersed | |
| Lcy3g1810 | Lcy-Chr3:45311503 | Lcy11g0915 | Lcy-Chr11:27405421 | 6.84E-94 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy3g1810 | K02210 | - | csv:101219064 | 1377.46 |