Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1810 ATGTCAGCCATGAAAGATACCGGAGCTCTGGACTTCACCGCCGACAAAGTGCTCGCAAAGGAGTTCCTCGCGAACTTCGCCGACGCAAATGGCGAAGCGAAGTACTTAAACATCCTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAATTCAAATCGATCTCGAGGACGTCTTTAATTATAAGGACTTGGACGAGGATTTCCTCAGACGTATTACAGAAAACACTCGGCGATATATTGGAATTTTTGCCGATGCTATTGATGAGCTCATGCCTGAGCCAACAGAGGCGTTTATAGATGACGATCATGACATATTAATGACACAACGGTCTGATGATGGACCGGATACTGTTGATAACACTGACCCACGCCAAAAGATGCCTCCGGAAATTAAACGATACTTCTTTAAAGGGATTCTGTCATTTCCAAATCGCCTTATGCTTGATCATTCTTCGTGCAGTGAAGTTTATATTAGAGCACCTTCAAAGGGTCGTCCATTTACCATAAGAGAGGTCAAGGCATCATATATTGGTCAACTTGTGAGGATATCTGGTATTGTGACACGCTGTTCAGATGTTAAGCCATTGATGCAAGTGGCAGTTTATACATGCGAAGACTGTGGTTTTGAGATATACCAGGAGGTAACAGCTCGAGTCTTCATGCCCCTGTTTGAGTGTCCATCTCAGCGTTGTAGAACAAACCAAACAAAAGGCAACTTAATTCTTCAACTTAGAGCGTCCAAATTTCTGAAGTTTCAGGAGGCCAAAATTCAAGAGTTAGCTGAGCATGTCCCAAAAGGTCATATTCCTCGGACAATGACTGTTCATCTTAGGGGTGAATTAACTAGGAAGGTAGCTCCAGGTGATGTTGTTGAACTATCAGGGATTTTTCTTCCTATTCCTTATACGGGTTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATATGAGGAATATGAACTTAGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCTGAGGATGGTGATATTTACAATAAACTGGCACGATCTTTGGCACCTGAAATTTTTGGGCATGAAGATATTAAAAAAGCTTTACTGCTTCTCCTTGTTGGTGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCACATATGTTTGATGGGCGATCCTGGAGTTGCAAAAAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGAGTCTACACGACTGGCAAAGGTAGCAGTGGTGTTGGTCTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGAGCATTGGTGTTGGCTGACATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATACATGAAGTCATGGAGCAACAGACCGTGAGTATTGCCAAGGCTGGGATCACCACGTCTCTAAATGCCAGGACTGCTGTCCTTGCTGCAGCCAATCCAGCATGGGGAAGATATGACCTACGCAGAACTCCAGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTTGATCTTCTTTGGTTGATCCTAGATCGAGCTGACATGGATAATGATCTTGAAATGGCTAGACATGTTGTTTATGTCCATCAGAATAGAGAATCTCCTGCTCTTGGCTTCACTCCACTTGAATCATCTGTTCTTCGAGCTTATATTTCAGCTGCAAGAAGATTGTCCCCTTACGTTCCCAAGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGTATTCGACAGGAAGAAGCTAAATCTAACACTCCCCATTCATATACCACAGTCAGAACTCTACTAAGCATTCTTCGGATATCAGCTGCTCTAGCAAGGCTTAGATTCTCTGAGACTGTGGTTCAGAGTGATGTCGATGAGGCTCTAAGGTTAATGCAAATGTCAAAATTCTCTCTATACTCGGATGACCGTCAAAAATCTGGTCTAGATTCTATCTCAGATATTTATTCAATCCTGCGTGATGAAGCTGCCAGAACCAATAAAATGGATGTGAGCTATGCACACGCCCTTAACTGGATTTCTAGGAAGGGATACAGCGAAGCTCAACTAAAAGAATGTTTGGAGGAGTATGCAGCCTTGAATGTGTGGCAAATACATCCACACACCTTCGACATTCGGTTTATAGATGCTTGA 2232 43.23 MSAMKDTGALDFTADKVLAKEFLANFADANGEAKYLNILQEVANRRVRAIQIDLEDVFNYKDLDEDFLRRITENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTVDNTDPRQKMPPEIKRYFFKGILSFPNRLMLDHSSCSEVYIRAPSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVVQSDVDEALRLMQMSKFSLYSDDRQKSGLDSISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 743
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 45311503 45317519 + Maker00014061 Lcy3g1810 629002
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1810 743 PRINTS Mini-chromosome maintenance (MCM) protein family signature 531 539 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy3g1810 743 PRINTS Mini-chromosome maintenance (MCM) protein family signature 480 493 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy3g1810 743 PRINTS Mini-chromosome maintenance (MCM) protein family signature 452 466 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy3g1810 743 PRINTS Mini-chromosome maintenance (MCM) protein family signature 504 516 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy3g1810 743 PRINTS Mini-chromosome maintenance (MCM) protein family signature 392 407 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy3g1810 743 FunFam DNA replication licensing factor MCM7 336 668 - -
Lcy3g1810 743 SUPERFAMILY Nucleic acid-binding proteins 19 319 IPR012340 -
Lcy3g1810 743 SMART mcm 164 663 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy3g1810 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 672 IPR027417 -
Lcy3g1810 743 Gene3D - 195 249 - -
Lcy3g1810 743 Pfam MCM AAA-lid domain 578 661 IPR041562 -
Lcy3g1810 743 Gene3D - 16 106 - -
Lcy3g1810 743 Gene3D - 336 668 IPR027417 -
Lcy3g1810 743 FunFam DNA replication licensing factor MCM7 195 249 - -
Lcy3g1810 743 Pfam MCM OB domain 168 299 IPR033762 -
Lcy3g1810 743 FunFam DNA replication licensing factor MCM7 15 106 - -
Lcy3g1810 743 CDD MCM7 354 661 IPR008050 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lcy3g1810 743 Pfam MCM N-terminal domain 20 102 IPR027925 -
Lcy3g1810 743 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 16 713 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006270(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Lcy3g1810 743 ProSitePatterns MCM family signature. 460 468 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Lcy3g1810 743 Pfam MCM P-loop domain 339 561 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy3g1810 743 Gene3D - 168 296 IPR012340 -
Lcy3g1810 743 ProSiteProfiles MCM family domain profile. 351 557 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0019 Lcy-Chr1:184157 Lcy3g1810 Lcy-Chr3:45311503 1.34E-82 dispersed
Lcy1g0195 Lcy-Chr1:1792784 Lcy3g1810 Lcy-Chr3:45311503 9.88E-96 dispersed
Lcy3g0984 Lcy-Chr3:33658553 Lcy3g1810 Lcy-Chr3:45311503 4.43E-107 dispersed
Lcy3g1810 Lcy-Chr3:45311503 Lcy4g2051 Lcy-Chr4:47083917 3.10E-90 dispersed
Lcy3g1810 Lcy-Chr3:45311503 Lcy11g0915 Lcy-Chr11:27405421 6.84E-94 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1810 K02210 - csv:101219064 1377.46