Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1841 ATGGAGGTGATTTATTTTGGTAAAGAGACTCATCTTGTTGATGAAATTCAGTCCATCGATGCTGGGATTTCGATTGATCCGACTCTCGATCGTGTTCGTGCTTCTGAATCTGTTTGTTCCAGCTCTCAATCGGATATTAAACCCATGAAGAAAATTCCAGATTCCGATGCCGATTCGGCCAACGGTTGGGAATTTCCGAGCCTCCGGTCGGGGAGTTTTGCTGATATTGGGCCTAGGAGATATATGGAAGATGAACATATAAGGATAGATGATCTGTCTTCACATTTAGGATCGCTCTTTAAGTTTCCCAAGCCAAGTGGTTTCTATGGGGTGTTTGATGGACATGGAGGACCTGAAGCAGCAGCTTTTATCAGAAAGAATGTTCTTAGACTCTTTTTTGAGGATGTTAGGTTTCCTCAAATGCCAGATGTTGATGAAGTCTTGCCGGAGGAGATAGAAAGTTTTCTCAGGAAGGCATTTCTTCTGGCTGATCAAGCTCTGGCCGATGATTCCGGTGTCAGTAATTCGTCCGGGACAACTGCCCTGACTGCTCTTGTACTTGGAAGGCTTTTAATGGTGGCTAATGTTGGAGATTGCCGGGCTGTTCTCAGCCGGAACGGGGAGGCAGTAGATATGTCTCAAGACCACAGGCCGATTTATTCTCCAGAGAAGCAACGGGTAGAAGAGTTGGGTGGCTTTGTTGATGGTGGCTATCTTAACGGCGTTTTATCGGTTTCCAGGGCCTTGGGGGATTGGGACATGAAGCTCCCCCATGGTTCTCCTTCACCTCTCATTGCAGAACCAGAATGCAGGCAGGTGGTTCTTACAGAGGAGGATGAATTCTTGATCATAGCCTGCGACGGGATTTGGGATGTGATATCAAGCCAGCAAGCAGTTGATGTAGTTCGACAGGGACTTCAGCGACATGATGACCCTGAGCGATGCGCTCGAGATCTCGTCCTGAAGGCTTTGCGATTAGACTCATTTGATAATCTCACTGTTGTTATTGTTTGCTTCTCTAGTTTCCATCGTGACAACCCTCCACTACCACAGCAGCGAAAATTGAGATACTGCAGCCTCTCTGCACAGGCCCTTTGTAGCTTGCAGAGATGGTTGGATAAAAGTGGATGCCAATGA 1137 46.97 MEVIYFGKETHLVDEIQSIDAGISIDPTLDRVRASESVCSSSQSDIKPMKKIPDSDADSANGWEFPSLRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLFKFPKPSGFYGVFDGHGGPEAAAFIRKNVLRLFFEDVRFPQMPDVDEVLPEEIESFLRKAFLLADQALADDSGVSNSSGTTALTALVLGRLLMVANVGDCRAVLSRNGEAVDMSQDHRPIYSPEKQRVEELGGFVDGGYLNGVLSVSRALGDWDMKLPHGSPSPLIAEPECRQVVLTEEDEFLIIACDGIWDVISSQQAVDVVRQGLQRHDDPERCARDLVLKALRLDSFDNLTVVIVCFSSFHRDNPPLPQQRKLRYCSLSAQALCSLQRWLDKSGCQ 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45607696 45609524 + Maker00015070 Lcy3g1841 629033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1841 378 PANTHER PROTEIN PHOSPHATASE 2C 54 339 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lcy3g1841 378 SUPERFAMILY PP2C-like 64 341 IPR036457 -
Lcy3g1841 378 CDD PP2Cc 69 339 IPR001932 -
Lcy3g1841 378 FunFam Probable protein phosphatase 2C 22 54 342 - -
Lcy3g1841 378 Gene3D - 49 345 IPR036457 -
Lcy3g1841 378 Pfam Protein phosphatase 2C 79 331 IPR001932 -
Lcy3g1841 378 ProSiteProfiles PPM-type phosphatase domain profile. 69 339 IPR001932 -
Lcy3g1841 378 ProSitePatterns PPM-type phosphatase domain signature. 108 116 IPR000222 GO:0043169(InterPro)
Lcy3g1841 378 SMART PP2C_SIG_2 84 339 IPR001932 -
Lcy3g1841 378 SMART PP2C_4 59 337 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1841 Lcy-Chr3:45607696 Lcy9g2338 Lcy-Chr9:47748218 2.63E-98 dispersed
Lcy3g1841 Lcy-Chr3:45607696 Lcy12g0891 Lcy-Chr12:12724307 3.17E-129 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1841 K14803 - csv:101216626 672.544