Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1856 ATGGACGATAGCTGTGCGGTTTGTGCCGATACTCTTGAATGGGTTGCCTATGGGTCTTGTGGCCATCGCGATGTCTGCTCCACCTGCGTTGCTCGTCTTCGATTCATTTGCGGCGATCGCCGCTGTTGCATCTGCAAGTCGGAATCCGCCGTTGTGTTCGTCACTAAGGCCTTAGGAGATTATACAAGGACGATCAATGACTTCACTGTCTTTCCTTCTGAACCAAGAGAAGGTCGTAATGGATCCTATTGGTATCATGAAGACACACAAACATTTTTTGATGATGTTGACCACTACAAGATGATAAAAGCAATGTGCAGGTTGTCATGCAGTGTGTGTGATAAGATAGGTGAAGATCAACCAAATGATGGCTCAAAGCGCCGAGGAAGGTTTCGGAATATTGAGCAGCTAAAGGGCCATTTGTTTCATCGCCATAAGTTGTTTATGTGCAGCCTTTGTTTGGAAGGAAGAAAGGTTTTTATTTGTGAACAGAAGCTATATAATAGAGCACAATTGAATCAGCATATACACACTGGTGACTCCGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTCACCGGGCATCCTATGTGTGAATTTTGCAGAACTCCTTTTTATGGAGATAATGAGCTGTATACTCATATGTCGACTGAGCATTATACATGTCATATATGTCAAAGGCTCCATCCTGGGCAGTATGAATACTATAAGAATTATGATGACCTAGAGGCAAGTTGTGATTACTATACCCCCTTTAACAATGAATATTATGAAGCCTGCCTTGCTAAAAAGTTTATTGTGTTCCAATCTGAAGCAGAAATGAAGAGGCATAATACTATTGAGCATGGTGGCAAGCTATCTCGATCAAAGCGAAATGCTGCTTTGCAGATACCAACCAGTTTTCGATATCGAAGAAGCAACGAGCAGGATAATCGCCGTGGTAGACGGACATTTCGTCGTGATTCTTCTGACGATCTGCTTTCTTTAGCCATTCAAGAAAGTTTTGAATCAGCCAATGTTGATGACACCAATCATGACCCATTACCTGGCGGACAAGTAGCCTCGGATCAGGGAAATCTAAGCAACATTGATCCTTTAGTTGAACCATTTGAATCATTAGCAACAACAGATGCCGAATCAGCTTCTAGATACCTTCAAGCCTTGGGCCATTCTAGGAATTCCCAATTGGAGCAATCGTCCTTTCCACCCCTTTCCACAGCACCTAGCAGCAGCCATCCAAAGCCCATGCAGGACAAAGACGCTTTACATAATAACAGTATGGCAGCTCATCTTCGCCGCCAGAGGAATGTGACTGTTCTGAATTCTGCTCAAGGTTGGCCAAAATCAAGTCGTGCCCCTGTGCCACCATCAAATAATTCATCTCAAGCTTGGCCTGCAATAAATGTTAATCATCCAGCGTCAAGCAGTTCTGGGCAGACTAAGAGTGTTGTTACCATCAGTAATGGCTCTTCAGTCTCTGGTTACTCAAATGTTGCTCAGGTGCATGCGAAGGCTCGATCTAGTTCTTCAAGTGGATCAGGTAGTAGCAGTAGGATCAGTCACTCTGCTTCCGCTCCCAGTCTCACCGACATGGCCTATACTGAACCCTCAGTTAATGAATTCCCTCCAGTTTCCGCAGCACAGGCTCGGAAGGTGCCCTCAAGTAGCCAGAGTTCAATGAACATGGAAGATGTCCAGACAGCAAACAAATCTCTAGTTGAAAAGATACGCGCTGCTCTTGATTTTGACCCAGATAGATATGCCATTTTTAAAGATATATCTGCACAATATCGTCAGGGTCAGATTGACACGGAAATGTATCTAGACTGTGTGCAGCAGTTCGGTCTGTCACATCTTGTGCTTGAGCTGGCTAGGCTCTGTCCTGATACTCAGAAACAGAAAGAACTTGTGGAGACCTATAATGCTAGTTTACATAAAGATGTGGTCCAAGAAAATGGTAGGGCTCAAGATAGTATTCAATTTAAAGACAGAAGTAAAGGAAAGAAAGGTAAAGGGAAGTCTATGGATGTTAAGGACAGCACATCCAAGGACAAATTAGCCGATAGTATCTTGAGTAGTGTTCGGGAACTGCAGTCAAGTTTGAGGCCATCGGAGGAGAATGTAGAGGTATTGTTGAAGGGTGACTACCGTGCTGCGAAAGGGAAATCGAAGATATCATCTGAGGACCAACAAGGTGGGATAGGAGGCCAAAACAGTCAACCGTCTACTGGTTTATCGAACCAAAGCACCGGGGATGGGGGTGGGGGGAGCAAGCAGAAAAAGAAAACTTCGAAGTTCCATAGAGTTCGTTTAGGTGATGGTTCAGTTGCTGCACTTCTAGATTTAAAGAACTCCAATCCCGAACCTGACCCGGTAGAAAGAGTAGAGGACAGGGACAATGCTGGGGCATTGCCTGTTCGGGGTGTGTGGAGAAATGGTGCTCAGAGGCTTTTCTCCTAG 2463 44.82 MDDSCAVCADTLEWVAYGSCGHRDVCSTCVARLRFICGDRRCCICKSESAVVFVTKALGDYTRTINDFTVFPSEPREGRNGSYWYHEDTQTFFDDVDHYKMIKAMCRLSCSVCDKIGEDQPNDGSKRRGRFRNIEQLKGHLFHRHKLFMCSLCLEGRKVFICEQKLYNRAQLNQHIHTGDSEVDGSESERGGFTGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRLHPGQYEYYKNYDDLEASCDYYTPFNNEYYEACLAKKFIVFQSEAEMKRHNTIEHGGKLSRSKRNAALQIPTSFRYRRSNEQDNRRGRRTFRRDSSDDLLSLAIQESFESANVDDTNHDPLPGGQVASDQGNLSNIDPLVEPFESLATTDAESASRYLQALGHSRNSQLEQSSFPPLSTAPSSSHPKPMQDKDALHNNSMAAHLRRQRNVTVLNSAQGWPKSSRAPVPPSNNSSQAWPAINVNHPASSSSGQTKSVVTISNGSSVSGYSNVAQVHAKARSSSSSGSGSSSRISHSASAPSLTDMAYTEPSVNEFPPVSAAQARKVPSSSQSSMNMEDVQTANKSLVEKIRAALDFDPDRYAIFKDISAQYRQGQIDTEMYLDCVQQFGLSHLVLELARLCPDTQKQKELVETYNASLHKDVVQENGRAQDSIQFKDRSKGKKGKGKSMDVKDSTSKDKLADSILSSVRELQSSLRPSEENVEVLLKGDYRAAKGKSKISSEDQQGGIGGQNSQPSTGLSNQSTGDGGGGSKQKKKTSKFHRVRLGDGSVAALLDLKNSNPEPDPVERVEDRDNAGALPVRGVWRNGAQRLFS 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45727440 45733166 + Maker00013973 Lcy3g1856 629048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1856 820 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Lcy3g1856 820 MobiDBLite consensus disorder prediction 338 365 - -
Lcy3g1856 820 PANTHER ZINC FINGER PROTEIN 598 1 814 IPR044288 GO:0016567(PANTHER)|GO:0043022(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0072344(InterPro)|GO:0072344(PANTHER)
Lcy3g1856 820 MobiDBLite consensus disorder prediction 649 682 - -
Lcy3g1856 820 MobiDBLite consensus disorder prediction 722 804 - -
Lcy3g1856 820 CDD RING-HC_ZNF598 3 53 IPR041888 -
Lcy3g1856 820 MobiDBLite consensus disorder prediction 446 483 - -
Lcy3g1856 820 MobiDBLite consensus disorder prediction 504 528 - -
Lcy3g1856 820 MobiDBLite consensus disorder prediction 392 421 - -
Lcy3g1856 820 MobiDBLite consensus disorder prediction 392 414 - -
Lcy3g1856 820 MobiDBLite consensus disorder prediction 658 682 - -
Lcy3g1856 820 MobiDBLite consensus disorder prediction 726 758 - -
Lcy3g1856 820 MobiDBLite consensus disorder prediction 788 802 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1856 K22381 - csv:101214376 1389.02