Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1859 ATGGGATGCTTTGGTTGCTGCGAAGAGGATGCTATCCAGAAGGCTGCTGATAACAGCAGCATGTACCCAGTAAAAAGTTCAGCAGGAACTGATGAAAGCTATCACAAACGGCAAACTGCACCTAAGAGTCCTCCGATGGTGAAATTGCGGCCTATTGAAGTCCCTGCCATATCATTTCAGGAACTAAAGGAGATTACGAAAAATTTTGATACAGACTGTTTGATTGGAGAGGGTTCCTACGGTAGAGTATACTATGGGGTATTTACAAGTGGGCAGGCTGTGGCAATCAAAAAGTTGGATGACAGCAAACAACCTAATGATGAATTCTTATCCCAGGTTTCCTTGGTTTCAAGACTAAAGCACAACAATTTTCTAAATTTGATTGGGTACTGTGTTGATGGCAATTCTCGAATTCTTGCATATGAGTATGCTTCAAATGGATCTCTTCATGACATTTTACACGGGAGGAAAGGAGTCAAAGGAGCACAACCCGGCCCTGTTCTTTCCTGGGCACAAAGAGTAAAAATTGCTGTTGGTGCTGCAAGGGGTTTGGAGTATTTGCATGAAAAGGCCGATCCTCATATCATCCATCGTGACATAAAATCCAGCAACGTACTAATATTTGATGATGATTTGGCAAAAATTGCTGACTTTGATTTGTCAAACCAAGCCCCTGATATGGCTGCACGGCTTCATTCCACCCGTGTTCTTGGAACATTTGGTTATCATGCTCCCGAATACGCAATGACTGGACAATTGAATGCCAAGAGTGATGTGTACAGCTTTGGTGTCATCCTGCTTGAACTTTTGACAGGAAGAAAGCCAGTTGATCATACATTGCCTCGAGGACAGCAAAGCCTCGTGACATGGGCAACACCTAAACTTTGCGAGGACAAAGTTAAGCAGTGCGTTGATGCAAAACTAGGAGATGAGTACCCTCCCAAGTCAGTTGCAAAGTTTGCAGCCGTTGCTGCATTGTGCGTTCAATATGAGGCAGATTTCAGGCCAAACATGAGTATTGTAGTCAAAGCTCTGCAACCTCTGTTAAATGCCCGACCTGGTCCTGCTGGAGAAGCACCAACCCTGTAA 1089 44.17 MGCFGCCEEDAIQKAADNSSMYPVKSSAGTDESYHKRQTAPKSPPMVKLRPIEVPAISFQELKEITKNFDTDCLIGEGSYGRVYYGVFTSGQAVAIKKLDDSKQPNDEFLSQVSLVSRLKHNNFLNLIGYCVDGNSRILAYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDLAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLCEDKVKQCVDAKLGDEYPPKSVAKFAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGPAGEAPTL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45754066 45758590 + Maker00014246 Lcy3g1859 629051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1859 362 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g1859 362 MobiDBLite consensus disorder prediction 21 46 - -
Lcy3g1859 362 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
Lcy3g1859 362 SUPERFAMILY Protein kinase-like (PK-like) 44 345 IPR011009 -
Lcy3g1859 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 351 IPR052101 -
Lcy3g1859 362 FunFam pto-interacting protein 1 145 356 - -
Lcy3g1859 362 Gene3D Phosphorylase Kinase; domain 1 29 143 - -
Lcy3g1859 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Lcy3g1859 362 Pfam Protein tyrosine and serine/threonine kinase 73 345 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1859 362 CDD STKc_IRAK 75 348 - -
Lcy3g1859 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g1859 362 SMART serkin_6 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1859 Lcy-Chr3:45754066 Lcy5g0575 Lcy-Chr5:6565333 2.18E-160 dispersed
Lcy11g1203 Lcy-Chr11:34483456 Lcy3g1859 Lcy-Chr3:45754066 4.05E-169 transposed
Lcy12g0393 Lcy-Chr12:4806527 Lcy3g1859 Lcy-Chr3:45754066 1.59E-216 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65800 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1859 K13436 - csv:101215263 679.093