Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1870 ATGATGGATTCCGGCAACCTCTCCTCCTCCTCCTCCTCCTTGCCCCCTCCGATTTTCGTCACTAAGTTCGAGCTTCGGCCGCTCCTCGATATCCAAATCTTGGAGATCTCTTTTGCTCTCTTTGTGTTCTTCACCATCCATGTCATTAGACAGAAGCGACAATATGGCTTGTTCGTATGGCCTATCGTTGGGATGCTACCGTCTCTGATCACTGCAGCGCGTGGGAATCTCTATGAATGGATTACCGACCTGCTCTGCCGCCACAAGGGGACATTTCAGTTTCGAGGCCCGTGGTTCAGTAGCCTCAACTGTGTCGTCACGGCCGATCCTCGAAACTTGGAGCATCTTCTCAAGACCAAATTTGCCTCCTACCCTAAAGGCCCATTCTTCCGCGACACGGTGAAAGACCTTCTCGGTGATGGAATATTTGGAGCCGACGATGAGACGTGGCAGCGGCAGAGGAAGGTGGCGAGTATCGAGTTTCACTCGGCGAAGTTCCGACGACTGACAGTGCAGTCGCTGGAGGAGCTTGTGCACTCGAGGCTAGAAGGGGTGTTGGAGGATTTCGCACGGAGGTCGACGGCGGTGGACCTACAGGATGTTCTTCTAAGGCTGACGTTTGACAATGTGTGTATGATTGCCTTTGGGGCGGATCCCGGCTGCTTGGGCGGTGGCTTGCCGGAGATTCCCTTTGCTAAGGCCTTTGAGGATGCCACTGAGGCCACTGTTCTGCGCTTCATCACACCTACTTTCATATGGAAAGCAATGAGGTACCTGAACTTGGGAATGGAGAAGAAGCTGAAGCAATCAATAAAAGCCGTCGACGAATTTGCCGAGAATGTGATTCGAACACGGAAGAGAGAACTCTCTGCGGCGGAGCAACCGCAAGCCGATAACCAAAGATCCGACCTACTTACCGTGTTCATGAGGCTCAGAGACGAGCAAGGGCGGCCGTTCTCCGACAAGTTCCTCAGAGATATCTGCGTCAATTTCATACTCGCCGGAAGAGACACATCTTCGGTGGCATTGAGTTGGTTCTTCTGGTTGCTCGATCAAAATCCCGACGTGGAAGAGAAAATTCTGGCAGAAATTTGCAGAATCGTCGGCGAACGAGAAGAGGCCAGAACCAGAGAGCTTCGATTCGATTCGTTAGTGTTTAAACCAGAGGAAATCAAGAGAATGGAGTATCTGCACGCTGCGATTTCCGAAGCCCTGAGATTGTATCCATCAGTTCCCGTCGATCACAAAGAGGTCGTGGAGGACGATGTATTTCCAGACGGAACGATTCTGAAGAAAGGAACGAAAATCATCTACGCAATATACGCGATGGGGAGAATGGAAGCGATTTGGGGGAAAGATTGTCGTGAATTCAAACCTGAGAGATGGATGAAGGACGGTCGGTTCATGAGTGAATCGGCGTATCGATTCGCCGCCTTCAACGGCGGCCCACGGCTGTGTCTCGGGAAGGATTTTGCTTACTATCAAATGAAATACGTCGCCGCTTCGATCATCGGCCGCTACCGGGTGGCGGTGGCGACGGGACATCCGGTGGAGCCGAAGCTTGCCCTAACTTTCTACATGAAGAACGGCTTGAAGGTCAATTTGATTAAACGAGAACAGGGGCAGATTCGGAAATACCTGAAGTTAAATTGA 1653 51.48 MMDSGNLSSSSSSLPPPIFVTKFELRPLLDIQILEISFALFVFFTIHVIRQKRQYGLFVWPIVGMLPSLITAARGNLYEWITDLLCRHKGTFQFRGPWFSSLNCVVTADPRNLEHLLKTKFASYPKGPFFRDTVKDLLGDGIFGADDETWQRQRKVASIEFHSAKFRRLTVQSLEELVHSRLEGVLEDFARRSTAVDLQDVLLRLTFDNVCMIAFGADPGCLGGGLPEIPFAKAFEDATEATVLRFITPTFIWKAMRYLNLGMEKKLKQSIKAVDEFAENVIRTRKRELSAAEQPQADNQRSDLLTVFMRLRDEQGRPFSDKFLRDICVNFILAGRDTSSVALSWFFWLLDQNPDVEEKILAEICRIVGEREEARTRELRFDSLVFKPEEIKRMEYLHAAISEALRLYPSVPVDHKEVVEDDVFPDGTILKKGTKIIYAIYAMGRMEAIWGKDCREFKPERWMKDGRFMSESAYRFAAFNGGPRLCLGKDFAYYQMKYVAASIIGRYRVAVATGHPVEPKLALTFYMKNGLKVNLIKREQGQIRKYLKLN 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45893797 45896679 - Maker00014237 Lcy3g1870 629062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1870 550 CDD CYP86A 92 531 - -
Lcy3g1870 550 Gene3D Cytochrome P450 56 548 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 PRINTS E-class P450 group I signature 486 509 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 PRINTS E-class P450 group I signature 398 416 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 PRINTS E-class P450 group I signature 476 486 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 PRINTS E-class P450 group I signature 52 71 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 479 488 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy3g1870 550 FunFam Cytochrome P450 48 541 - -
Lcy3g1870 550 Pfam Cytochrome P450 59 523 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 SUPERFAMILY Cytochrome P450 56 538 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 PRINTS P450 superfamily signature 334 351 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 PRINTS P450 superfamily signature 399 410 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 PRINTS P450 superfamily signature 486 497 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 PRINTS P450 superfamily signature 477 486 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy3g1870 550 PANTHER CYTOCHROME P450 49 531 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1638 Lcy-Chr12:36741963 Lcy3g1870 Lcy-Chr3:45893797 1.85E-158 dispersed
Lcy13g0700 Lcy-Chr13:10104949 Lcy3g1870 Lcy-Chr3:45893797 1.24E-153 dispersed
Lcy13g1061 Lcy-Chr13:23713799 Lcy3g1870 Lcy-Chr3:45893797 8.05E-116 dispersed
Lcy1g1082 Lcy-Chr1:9824479 Lcy3g1870 Lcy-Chr3:45893797 3.22E-107 dispersed
Lcy1g1083 Lcy-Chr1:9836176 Lcy3g1870 Lcy-Chr3:45893797 3.87E-116 dispersed
Lcy3g1870 Lcy-Chr3:45893797 Lcy5g0812 Lcy-Chr5:12554633 7.23E-122 dispersed
Lcy12g0415 Lcy-Chr12:5066713 Lcy3g1870 Lcy-Chr3:45893797 5.49E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1870 K15402 - csv:101212202 969.918