Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1882 ATGGAGAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCTCATTAATGACAATCACAAGAGAAGGATGGAACTTCAAGAAACTGAAAACCATTTGGGGGTACAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTAAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACAAGCTAAGCAGGAACTTGAAGCTGCTGAATTAGAACTTCAGAACTTGCCTCCTTACGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTAGAGCTGGAAGTTTCTGCGAGTCAGAAGAGACTTATGAAGTCAGATATTGAAAAAAATATATCCCAAAAAAGAATTACTTTGAGGCAATGCTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAAAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCATTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTTTATGGTCCAGTGTTGCTTGAGGTTAATGTGTCAAATCGGACTCATGCTGACTACTTAGAAGGTCATATTCCATCCTATGTCTGGAAGTCCTTCATAACTCAAGATTCTGATGATCGTGATATTATGGTAAAAAACTTGGGTTCATTTGGAGTTCCTATCTTAAACTTTGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGGTTTCTGAGGAGGTTCGTGCATTTGGCATATATTCCCGGCTAGACCAAGTTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAGAAGGCAGATGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCTGGAAGTGTGGAGCCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATCGATGGGCTTCGATCCAGGAAAAATGAGCTAGAAGAAGCTGTTTCTGTATTAGAAGATAACTATAAATCATGTCAGAATGAGCTAAGATTGATAGAAGATGAAGAAGCTAAACTTCGCAAACACCGGGATGACATTATAAATACTGTGCAACATGAAAAGAGAAAACGCCGTGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCAGGAAGATGACCTGGATACTGTTGTGGCCAAGCTTGTTGACCAAGCTGCAAATTTTAACATCCAAAGGTTCCATTGTGCAATTAAAATTAAGCATTTGCTTGTTGAGACCGTTTCTTATAGACAGAGCTTGACTAAGAACCATATGTCCTCCATAGAAATTGAAGCAAAGATCAGAGAATTGGAGGCAAATCTGAAGCAGCACGAAAAGTTTGCTCTGCAAGCATCAGTGCAGTTCGAGTACTGCAAGAAGGAAGTCGAGGACTATCGACAGCAACTTTCAGTTGCCAAGAAGCATGCAGAATCTATTGCTGTGATCACACCTGACCTTGAGAAAGAATTTCTTGAGATGCCTACTACCATTGAGGAATTGGAGGCTGCTATTCAAGATAATATTTCTCAAGCTAATTCCATTCTATTCTTGAACCATAATGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAATACCATTGCGCGAAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCCGACGTTGATGAGCTAAAGGGAAATTGGCTCCCAACATTAAGAAGACTTGTTTCTCAGATAAATGAGACTTTCAGTCGAAATTTTCAAGAGATGGCTGTTGCTGGGGAAGTGTTATTGGATGAGCATGATATGGACTTTGATCAGTTTGGGATACTTATTAAAGTAAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGCTCGGTGTCGACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCTATTAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACGAATACACCACAGTGTTTCCTACTTACTCCAAAGTTACTTCCAGAACTGGAATATAGTGAGGCCTGTAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCTAGAGCATGGAGCAATGGGGATAGCTGGGGAACGTTGATGAACTATGTTGGAGAAAGCCGATGTTGA 2301 40.37 MEKAKLDAKTKKYSTLINDNHKRRMELQETENHLGVQVQGKLKEMEDLRKQEESRQQRILQAKQELEAAELELQNLPPYEHPKDEIERLRAQILELEVSASQKRLMKSDIEKNISQKRITLRQCLDRLKDMENTNTKLLQALKNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSDDRDIMVKNLGSFGVPILNFVGGERRTNQHFEVSEEVRAFGIYSRLDQVFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDGLRSRKNELEEAVSVLEDNYKSCQNELRLIEDEEAKLRKHRDDIINTVQHEKRKRREMENRIDQRKKKLESMEQEDDLDTVVAKLVDQAANFNIQRFHCAIKIKHLLVETVSYRQSLTKNHMSSIEIEAKIRELEANLKQHEKFALQASVQFEYCKKEVEDYRQQLSVAKKHAESIAVITPDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINTIARKLEADKHELRKCMADVDELKGNWLPTLRRLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45972005 45989623 - Maker00014471 Lcy3g1882 629074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1882 766 Coils Coil 42 72 - -
Lcy3g1882 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 717 IPR027417 -
Lcy3g1882 766 Coils Coil 460 480 - -
Lcy3g1882 766 Gene3D - 297 420 - -
Lcy3g1882 766 Coils Coil 555 575 - -
Lcy3g1882 766 Coils Coil 121 141 - -
Lcy3g1882 766 Gene3D - 560 735 IPR027417 -
Lcy3g1882 766 Coils Coil 335 411 - -
Lcy3g1882 766 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 2 758 IPR027131 GO:0000724(InterPro)|GO:0000724(PANTHER)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Lcy3g1882 766 FunFam Structural maintenance of chromosomes 5 562 733 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1882 Lcy-Chr3:45972005 Lcy6g0287 Lcy-Chr6:2644389 2.68E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1882 K22803 - csv:101210248 1436.01