Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1882 ATGGAGAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCTCATTAATGACAATCACAAGAGAAGGATGGAACTTCAAGAAACTGAAAACCATTTGGGGGTACAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTAAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACAAGCTAAGCAGGAACTTGAAGCTGCTGAATTAGAACTTCAGAACTTGCCTCCTTACGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTAGAGCTGGAAGTTTCTGCGAGTCAGAAGAGACTTATGAAGTCAGATATTGAAAAAAATATATCCCAAAAAAGAATTACTTTGAGGCAATGCTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAAAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCATTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTTTATGGTCCAGTGTTGCTTGAGGTTAATGTGTCAAATCGGACTCATGCTGACTACTTAGAAGGTCATATTCCATCCTATGTCTGGAAGTCCTTCATAACTCAAGATTCTGATGATCGTGATATTATGGTAAAAAACTTGGGTTCATTTGGAGTTCCTATCTTAAACTTTGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGGTTTCTGAGGAGGTTCGTGCATTTGGCATATATTCCCGGCTAGACCAAGTTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAGAAGGCAGATGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCTGGAAGTGTGGAGCCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATCGATGGGCTTCGATCCAGGAAAAATGAGCTAGAAGAAGCTGTTTCTGTATTAGAAGATAACTATAAATCATGTCAGAATGAGCTAAGATTGATAGAAGATGAAGAAGCTAAACTTCGCAAACACCGGGATGACATTATAAATACTGTGCAACATGAAAAGAGAAAACGCCGTGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCAGGAAGATGACCTGGATACTGTTGTGGCCAAGCTTGTTGACCAAGCTGCAAATTTTAACATCCAAAGGTTCCATTGTGCAATTAAAATTAAGCATTTGCTTGTTGAGACCGTTTCTTATAGACAGAGCTTGACTAAGAACCATATGTCCTCCATAGAAATTGAAGCAAAGATCAGAGAATTGGAGGCAAATCTGAAGCAGCACGAAAAGTTTGCTCTGCAAGCATCAGTGCAGTTCGAGTACTGCAAGAAGGAAGTCGAGGACTATCGACAGCAACTTTCAGTTGCCAAGAAGCATGCAGAATCTATTGCTGTGATCACACCTGACCTTGAGAAAGAATTTCTTGAGATGCCTACTACCATTGAGGAATTGGAGGCTGCTATTCAAGATAATATTTCTCAAGCTAATTCCATTCTATTCTTGAACCATAATGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAATACCATTGCGCGAAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCCGACGTTGATGAGCTAAAGGGAAATTGGCTCCCAACATTAAGAAGACTTGTTTCTCAGATAAATGAGACTTTCAGTCGAAATTTTCAAGAGATGGCTGTTGCTGGGGAAGTGTTATTGGATGAGCATGATATGGACTTTGATCAGTTTGGGATACTTATTAAAGTAAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGCTCGGTGTCGACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCTATTAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACGAATACACCACAGTGTTTCCTACTTACTCCAAAGTTACTTCCAGAACTGGAATATAGTGAGGCCTGTAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCTAGAGCATGGAGCAATGGGGATAGCTGGGGAACGTTGATGAACTATGTTGGAGAAAGCCGATGTTGA 2301 40.37 MEKAKLDAKTKKYSTLINDNHKRRMELQETENHLGVQVQGKLKEMEDLRKQEESRQQRILQAKQELEAAELELQNLPPYEHPKDEIERLRAQILELEVSASQKRLMKSDIEKNISQKRITLRQCLDRLKDMENTNTKLLQALKNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSDDRDIMVKNLGSFGVPILNFVGGERRTNQHFEVSEEVRAFGIYSRLDQVFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDGLRSRKNELEEAVSVLEDNYKSCQNELRLIEDEEAKLRKHRDDIINTVQHEKRKRREMENRIDQRKKKLESMEQEDDLDTVVAKLVDQAANFNIQRFHCAIKIKHLLVETVSYRQSLTKNHMSSIEIEAKIRELEANLKQHEKFALQASVQFEYCKKEVEDYRQQLSVAKKHAESIAVITPDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINTIARKLEADKHELRKCMADVDELKGNWLPTLRRLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45972005 45989623 - Maker00014471 Lcy3g1882 629074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1882 766 Coils Coil 42 72 - -
Lcy3g1882 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 717 IPR027417 -
Lcy3g1882 766 Coils Coil 460 480 - -
Lcy3g1882 766 Gene3D - 297 420 - -
Lcy3g1882 766 Coils Coil 555 575 - -
Lcy3g1882 766 Coils Coil 121 141 - -
Lcy3g1882 766 Gene3D - 560 735 IPR027417 -
Lcy3g1882 766 Coils Coil 335 411 - -
Lcy3g1882 766 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 2 758 IPR027131 GO:0000724(InterPro)|GO:0000724(PANTHER)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Lcy3g1882 766 FunFam Structural maintenance of chromosomes 5 562 733 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1882 K22803 - - csv:101210248 1436.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1882 Lcy-Chr3:45972005 Lcy6g0287 Lcy-Chr6:2644389 2.68E-07 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy3g1882 . 2 757 Structural Maintenance of Chromosomes family AT5G15920 65.6 3.0e-283 972.2
Lcy6g0287 . 77 1186 Structural Maintenance of Chromosomes family AT5G07660 59.6 0.0e+00 1222.2
Lcy6g0287 . 63 1186 Structural Maintenance of Chromosomes family AT5G61460 62.5 0.0e+00 1307.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32