Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1897 ATGGCGAGGACTAGGGTTCATGAGCCATCGCGAATGTTAGCACGTAGTACATGCACGATTCGGCTGACTGAAATTTTCGGGAGGGCGACCAGATCTATTTTGGGCTTCTTTCTCATGGTGGGTCTTTGCAATGGCGTGCATTACCTTTTGAGGTCCTTTTCTCAACCTCACATTACCTCTGATACGATTGTAGGTTTGGTTGTTGGCAACTTCATGAGGAAAGGACTTGATCTATCGACGATTAAGACACTGCGTTATATCGTTGACTTTGGTATGATATGTTATATGTTTGTGCTGGGATTGGAGATGGATCCATATGTACTCTTCAAAGCACCTACACGTGATGCTAAAGTAGCTTATGCTGGAATGATTTCGACACTCGTCTTAGCCTGTTCCATAACCCCATTTGTCAGCTTTTCAAAGACAAAAGAGATCAGTTTCATTCTCTCCCTCTCAACTGTCCTCTCTAGCACAGCTTCTCCTGTGCTAACCCGTTTGATCACCAATCTTAAAATAGGCAAGTCAGATATAGGCCGCCTCGTTATTGCTGCTGGGATGCATTCTGATTTTATATCCACTCTCATTATCTGTATCGGTTATCTCTTTTGCAAATGTCAAGAGACACGCATTTCCTTAATAAAAGGTTTTCAACTAGGTGTTATGTTACTGATCCAGTCAGTAATCACAGCGAAGGTTTCACCGGTATTCATGAACTGGGTAAATAATGAAAACCCCGAAGGTAAGCCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCGTCCTTTGCAGCTGCCCTACTATATTTGGTTACAATCCGATTCTCAGTGCATTCTTAGCTGGAACGTTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAACTACCTGCTTGCTACCATTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATGCAAGTTGAGTGACTTTGAACCTGGACAATTAATGACATGGGTCAGGTTAATTCTGCTTTTTGCTATTGCAACTGTAGGAAAAGTTGTTGGTACTGTCATTGCTGGCGCAATTTTGGGATTTCATTGGCCTGAATCAGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATTTACTTAGCCATTGCTGCAAGAACCGCTGGAAAGACGACTACATCTACAAGCATTGTGATGGTAACTGTAATCTTCTTCACAGTCGTGCATGCTCCAAAAGTTGTAGCACATATAATCAAAAGGGCGAGGAAACGCACACCTACACATCGAATGGCACTCCAATTGCTTGATCCATCAAGTGAGCTTAGGATCTTGTTGTGTGTACATGGACCTCAGAACACTCCAGCAGCCATTAACATTATGGAGATCTCTCGAGGGACAACTAACCCTGGAGTTGTTGTATATGTCACAGACATGATTGAACTTACAGATGAAATAGCAGCCACATTAGTGCAAGGTGAAGGAGTGGACACCGTGACTGTAACCCACACCGGAGTGACACAATTAAGAGACCAAGTTACCGCTGCAGTTCAGAGCTATGTAGATGAAAATGGAGAAGGAATTACCCTCAGAAGAATGTTAGCTCTCTCAACACTCAATTCTATGGCTCAGGACATTTGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTTCACAAGAGCCCCCGTGGAGATGGGTCGTTGAGTGAGGGCCACACAGGTTTCCGCTACGTAAACCGCAAGGTTCTCAGGAATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTAGAGAAAATTTCAAGGTCGTATGTATCTCAGAATGTGGCAGTCATCTTCATTGGTGGTAAAGATGACCGAGAAGCATTAGCCTATGCAGGTCGAGTTGCAAGGCATCCAGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCTGGGACTTACAGGATAAGTGTTGCTGAGCAGGAAGAGGAAATGAGACTAGACGATGAATGCTTTGCTTATTTTTATGAACGACATGTGGCTGGTGGGCATGTTGCTTATGTCGAAAAACACCTTGCCAGTTCCTCCGAGACGTATTCTACTTTGAAATCATTTGAAGGGCAATATGCACTCATAATCGTCGGTCGAGGTGGAGGTGGAAGAGTCAACTCAGTGCTAACTTTTGGGATGAATGACTGGCAACAATGTCCAGAACTGGGTCCTATAGGGGATGTTCTTTCCGGGTCTGAATTCTCTGTTAGGACCTCAGTTTTGATCATCCAACAACACAATCTAAAAGGAGAACTAGATGGACTTGATGACGATTTTTCAATTATGTAG 2379 43.84 MARTRVHEPSRMLARSTCTIRLTEIFGRATRSILGFFLMVGLCNGVHYLLRSFSQPHITSDTIVGLVVGNFMRKGLDLSTIKTLRYIVDFGMICYMFVLGLEMDPYVLFKAPTRDAKVAYAGMISTLVLACSITPFVSFSKTKEISFILSLSTVLSSTASPVLTRLITNLKIGKSDIGRLVIAAGMHSDFISTLIICIGYLFCKCQETRISLIKGFQLGVMLLIQSVITAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAVLCSCPTIFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLATIFYPIFFFWMGVECKLSDFEPGQLMTWVRLILLFAIATVGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAARTAGKTTTSTSIVMVTVIFFTVVHAPKVVAHIIKRARKRTPTHRMALQLLDPSSELRILLCVHGPQNTPAAINIMEISRGTTNPGVVVYVTDMIELTDEIAATLVQGEGVDTVTVTHTGVTQLRDQVTAAVQSYVDENGEGITLRRMLALSTLNSMAQDICILAEELMGALIILPFHKSPRGDGSLSEGHTGFRYVNRKVLRNAPCSVGILVDRGLGSVEKISRSYVSQNVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEEEMRLDDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSFEGQYALIIVGRGGGGRVNSVLTFGMNDWQQCPELGPIGDVLSGSEFSVRTSVLIIQQHNLKGELDGLDDDFSIM 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46223657 46229579 + Maker00015121 Lcy3g1897 629089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1897 792 Gene3D - 443 744 - -
Lcy3g1897 792 Pfam Sodium/hydrogen exchanger family 49 419 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy3g1897 792 Gene3D - 29 429 IPR038770 -
Lcy3g1897 792 PANTHER CATION/H + ANTIPORTER 36 777 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lcy3g1897 792 FunFam Cation/H(+) antiporter 28 30 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1900 Lcy-Chr12:40267612 Lcy3g1897 Lcy-Chr3:46223657 5.72E-58 dispersed
Lcy3g1897 Lcy-Chr3:46223657 Lcy6g0833 Lcy-Chr6:8378773 6.20E-98 dispersed
Lcy3g1897 Lcy-Chr3:46223657 Lcy8g0168 Lcy-Chr8:3957644 7.51E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1897 K26731 - csv:101211645 1402.11