Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1897 ATGGCGAGGACTAGGGTTCATGAGCCATCGCGAATGTTAGCACGTAGTACATGCACGATTCGGCTGACTGAAATTTTCGGGAGGGCGACCAGATCTATTTTGGGCTTCTTTCTCATGGTGGGTCTTTGCAATGGCGTGCATTACCTTTTGAGGTCCTTTTCTCAACCTCACATTACCTCTGATACGATTGTAGGTTTGGTTGTTGGCAACTTCATGAGGAAAGGACTTGATCTATCGACGATTAAGACACTGCGTTATATCGTTGACTTTGGTATGATATGTTATATGTTTGTGCTGGGATTGGAGATGGATCCATATGTACTCTTCAAAGCACCTACACGTGATGCTAAAGTAGCTTATGCTGGAATGATTTCGACACTCGTCTTAGCCTGTTCCATAACCCCATTTGTCAGCTTTTCAAAGACAAAAGAGATCAGTTTCATTCTCTCCCTCTCAACTGTCCTCTCTAGCACAGCTTCTCCTGTGCTAACCCGTTTGATCACCAATCTTAAAATAGGCAAGTCAGATATAGGCCGCCTCGTTATTGCTGCTGGGATGCATTCTGATTTTATATCCACTCTCATTATCTGTATCGGTTATCTCTTTTGCAAATGTCAAGAGACACGCATTTCCTTAATAAAAGGTTTTCAACTAGGTGTTATGTTACTGATCCAGTCAGTAATCACAGCGAAGGTTTCACCGGTATTCATGAACTGGGTAAATAATGAAAACCCCGAAGGTAAGCCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCGTCCTTTGCAGCTGCCCTACTATATTTGGTTACAATCCGATTCTCAGTGCATTCTTAGCTGGAACGTTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAACTACCTGCTTGCTACCATTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATGCAAGTTGAGTGACTTTGAACCTGGACAATTAATGACATGGGTCAGGTTAATTCTGCTTTTTGCTATTGCAACTGTAGGAAAAGTTGTTGGTACTGTCATTGCTGGCGCAATTTTGGGATTTCATTGGCCTGAATCAGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATTTACTTAGCCATTGCTGCAAGAACCGCTGGAAAGACGACTACATCTACAAGCATTGTGATGGTAACTGTAATCTTCTTCACAGTCGTGCATGCTCCAAAAGTTGTAGCACATATAATCAAAAGGGCGAGGAAACGCACACCTACACATCGAATGGCACTCCAATTGCTTGATCCATCAAGTGAGCTTAGGATCTTGTTGTGTGTACATGGACCTCAGAACACTCCAGCAGCCATTAACATTATGGAGATCTCTCGAGGGACAACTAACCCTGGAGTTGTTGTATATGTCACAGACATGATTGAACTTACAGATGAAATAGCAGCCACATTAGTGCAAGGTGAAGGAGTGGACACCGTGACTGTAACCCACACCGGAGTGACACAATTAAGAGACCAAGTTACCGCTGCAGTTCAGAGCTATGTAGATGAAAATGGAGAAGGAATTACCCTCAGAAGAATGTTAGCTCTCTCAACACTCAATTCTATGGCTCAGGACATTTGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTTCACAAGAGCCCCCGTGGAGATGGGTCGTTGAGTGAGGGCCACACAGGTTTCCGCTACGTAAACCGCAAGGTTCTCAGGAATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTAGAGAAAATTTCAAGGTCGTATGTATCTCAGAATGTGGCAGTCATCTTCATTGGTGGTAAAGATGACCGAGAAGCATTAGCCTATGCAGGTCGAGTTGCAAGGCATCCAGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCTGGGACTTACAGGATAAGTGTTGCTGAGCAGGAAGAGGAAATGAGACTAGACGATGAATGCTTTGCTTATTTTTATGAACGACATGTGGCTGGTGGGCATGTTGCTTATGTCGAAAAACACCTTGCCAGTTCCTCCGAGACGTATTCTACTTTGAAATCATTTGAAGGGCAATATGCACTCATAATCGTCGGTCGAGGTGGAGGTGGAAGAGTCAACTCAGTGCTAACTTTTGGGATGAATGACTGGCAACAATGTCCAGAACTGGGTCCTATAGGGGATGTTCTTTCCGGGTCTGAATTCTCTGTTAGGACCTCAGTTTTGATCATCCAACAACACAATCTAAAAGGAGAACTAGATGGACTTGATGACGATTTTTCAATTATGTAG 2379 43.84 MARTRVHEPSRMLARSTCTIRLTEIFGRATRSILGFFLMVGLCNGVHYLLRSFSQPHITSDTIVGLVVGNFMRKGLDLSTIKTLRYIVDFGMICYMFVLGLEMDPYVLFKAPTRDAKVAYAGMISTLVLACSITPFVSFSKTKEISFILSLSTVLSSTASPVLTRLITNLKIGKSDIGRLVIAAGMHSDFISTLIICIGYLFCKCQETRISLIKGFQLGVMLLIQSVITAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAVLCSCPTIFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLATIFYPIFFFWMGVECKLSDFEPGQLMTWVRLILLFAIATVGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAARTAGKTTTSTSIVMVTVIFFTVVHAPKVVAHIIKRARKRTPTHRMALQLLDPSSELRILLCVHGPQNTPAAINIMEISRGTTNPGVVVYVTDMIELTDEIAATLVQGEGVDTVTVTHTGVTQLRDQVTAAVQSYVDENGEGITLRRMLALSTLNSMAQDICILAEELMGALIILPFHKSPRGDGSLSEGHTGFRYVNRKVLRNAPCSVGILVDRGLGSVEKISRSYVSQNVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEEEMRLDDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSFEGQYALIIVGRGGGGRVNSVLTFGMNDWQQCPELGPIGDVLSGSEFSVRTSVLIIQQHNLKGELDGLDDDFSIM 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46223657 46229579 + Maker00015121 Lcy3g1897 629089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1897 792 Gene3D - 443 744 - -
Lcy3g1897 792 Pfam Sodium/hydrogen exchanger family 49 419 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy3g1897 792 Gene3D - 29 429 IPR038770 -
Lcy3g1897 792 PANTHER CATION/H + ANTIPORTER 36 777 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lcy3g1897 792 FunFam Cation/H(+) antiporter 28 30 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1897 K26731 - - csv:101211645 1402.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1900 Lcy-Chr12:40267612 Lcy3g1897 Lcy-Chr3:46223657 5.72E-58 dispersed
Lcy3g1897 Lcy-Chr3:46223657 Lcy6g0833 Lcy-Chr6:8378773 6.20E-98 dispersed
Lcy3g1897 Lcy-Chr3:46223657 Lcy8g0168 Lcy-Chr8:3957644 7.51E-100 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g0168 . 5 816 Antiporter Super Family AT2G13620 71.4 0.0e+00 1158.3
Lcy1g1455 . 75 831 Antiporter Super Family AT3G53720 69.2 6.3e-291 997.3
Lcy1g1432 . 76 791 Antiporter Super Family AT3G53720 59.8 1.2e-233 807.0
Lcy6g0834 . 83 779 Antiporter Super Family AT3G53720 50.6 6.1e-185 645.2
Lcy6g0832 . 84 785 Antiporter Super Family AT3G53720 50.5 6.3e-182 635.2
Lcy6g0833 . 86 774 Antiporter Super Family AT3G53720 50.5 8.2e-182 634.8
Lcy10g0444 . 1 205 Antiporter Super Family AT3G53720 53.7 1.5e-55 215.3
Lcy6g0834 . 1 779 Antiporter Super Family AT5G41610 70.3 1.5e-311 1065.8
Lcy6g0833 . 1 777 Antiporter Super Family AT5G41610 68.9 9.8e-303 1036.6
Lcy6g0832 . 3 796 Antiporter Super Family AT5G41610 66.9 6.6e-299 1023.8
Lcy1g1455 . 8 812 Antiporter Super Family AT5G41610 52.0 3.2e-213 739.2
Lcy10g0444 . 1 205 Antiporter Super Family AT5G41610 69.3 2.0e-74 278.1
Lcy6g0833 . 1 797 Antiporter Super Family AT4G23700 66.1 1.6e-297 1019.2
Lcy6g0832 . 11 786 Antiporter Super Family AT4G23700 65.2 3.2e-285 978.4
Lcy6g0834 . 9 796 Antiporter Super Family AT4G23700 63.6 3.9e-283 971.5
Lcy10g0444 . 1 204 Antiporter Super Family AT4G23700 70.1 1.3e-73 275.4
Lcy6g0832 . 1 786 Antiporter Super Family AT3G17630 64.3 7.8e-276 947.2
Lcy6g0833 . 5 775 Antiporter Super Family AT3G17630 64.8 1.7e-275 946.0
Lcy6g0834 . 3 779 Antiporter Super Family AT3G17630 63.2 1.8e-272 936.0
Lcy1g1455 . 2 816 Antiporter Super Family AT3G17630 51.7 8.7e-211 731.1
Lcy10g0444 . 1 205 Antiporter Super Family AT3G17630 65.4 5.2e-70 263.5
Lcy6g0833 . 1 780 Antiporter Super Family AT1G64170 58.8 2.5e-245 845.9
Lcy6g0832 . 9 794 Antiporter Super Family AT1G64170 57.1 7.7e-239 824.3
Lcy6g0834 . 1 784 Antiporter Super Family AT1G64170 56.8 1.8e-235 813.1
Lcy10g0444 . 1 205 Antiporter Super Family AT1G64170 62.0 2.1e-63 241.5
Lcy8g0168 . 5 816 Antiporter Super Family AT2G13620 71.4 0.0e+00 1158.3
Lcy6g0833 . 1 780 Antiporter Super Family AT1G64170 58.8 2.5e-245 845.9
Lcy6g0832 . 9 794 Antiporter Super Family AT1G64170 57.1 7.7e-239 824.3
Lcy6g0834 . 1 784 Antiporter Super Family AT1G64170 56.8 1.8e-235 813.1
Lcy10g0444 . 1 205 Antiporter Super Family AT1G64170 62.0 2.1e-63 241.5
Lcy6g0833 . 1 797 Antiporter Super Family AT4G23700 66.1 1.6e-297 1019.2
Lcy6g0832 . 11 786 Antiporter Super Family AT4G23700 65.2 3.2e-285 978.4
Lcy6g0834 . 9 796 Antiporter Super Family AT4G23700 63.6 3.9e-283 971.5
Lcy10g0444 . 1 204 Antiporter Super Family AT4G23700 70.1 1.3e-73 275.4
Lcy6g0834 . 1 779 Antiporter Super Family AT5G41610 70.3 1.5e-311 1065.8
Lcy6g0833 . 1 777 Antiporter Super Family AT5G41610 68.9 9.8e-303 1036.6
Lcy6g0832 . 3 796 Antiporter Super Family AT5G41610 66.9 6.6e-299 1023.8
Lcy1g1455 . 8 812 Antiporter Super Family AT5G41610 52.0 3.2e-213 739.2
Lcy10g0444 . 1 205 Antiporter Super Family AT5G41610 69.3 2.0e-74 278.1
Lcy6g0832 . 1 786 Antiporter Super Family AT3G17630 64.3 7.8e-276 947.2
Lcy6g0833 . 5 775 Antiporter Super Family AT3G17630 64.8 1.7e-275 946.0
Lcy6g0834 . 3 779 Antiporter Super Family AT3G17630 63.2 1.8e-272 936.0
Lcy1g1455 . 2 816 Antiporter Super Family AT3G17630 51.7 8.7e-211 731.1
Lcy10g0444 . 1 205 Antiporter Super Family AT3G17630 65.4 5.2e-70 263.5
Lcy1g1455 . 75 831 Antiporter Super Family AT3G53720 69.2 6.3e-291 997.3
Lcy1g1432 . 76 791 Antiporter Super Family AT3G53720 59.8 1.2e-233 807.0
Lcy6g0834 . 83 779 Antiporter Super Family AT3G53720 50.6 6.1e-185 645.2
Lcy6g0832 . 84 785 Antiporter Super Family AT3G53720 50.5 6.3e-182 635.2
Lcy6g0833 . 86 774 Antiporter Super Family AT3G53720 50.5 8.2e-182 634.8
Lcy10g0444 . 1 205 Antiporter Super Family AT3G53720 53.7 1.5e-55 215.3
Lcy3g1897 . 47 793 Antiporter Super Family AT3G52080 55.8 2.0e-239 826.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008009 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34