Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1908 ATGCGGGCAAAGCAGCTAGCTGCCATGGAAACTGGAGAGTCTGTGGCAAAGGTTATAAAGAACATGGGCCCCAACGCATGTCAAATCTGTGGAGACAATGTCGGGAAGACCGTCGATGGCGAACCGTTTGTTGCCTGCAATGTTTGCACATTTCCTGTTTGCAGACCATGTTATGAGTACGAGAGAAAAGATGGGAATCAGTCTTGCCCTCAATGCAAAAGCAGATACAAGAGACACAAAGGAAGTCCTGCTGTTCTAGGTGATGAGGAGGATGTTGAGCTTGATGATGATGATGATGCCATTGATTTAAATTACATTTCTGAAAGTCAAAAACAGAAGCAAAAGATCGCGGAGCGCATGATGAGCTGGCAGATGGCATATGGACAAGCACAAGATCTCCCACCTCCAAATTACGACAAAGAAGTTTCTTTTAATCACATTCCTTTGCTCACCAATGGGCAGGAGGTTTCTGGAGAACTTTCAGCTGCATCACCCGAGCATCATTCGATGGCATCTCCAGGACATCCTCGTGGGAAGCCAATATATTCTCTTCCTTACTCAGCTGATATTAACCAATCACCTAATGTGCGAGGTGTGGATCCGACAAAGGAGTATAATTCATCAGGGCTAGGCAATGTAGCTTGGAAAGAGAGAGTTGATGGCTGGAAGATGAAACAGGAGAAGAATGCTGTACCAATGAGCACAGCCCATGCTGCATCTGAAAGGGGAGGTGGAGATATTGATGCCTGTACCGATGTGCTTGTTGATGACTCCTTACTAAATGATGAAGCTCGCCAGCCTCTCTCAAGAAAGGTTTCTATTCCATCATCAAGGATAAACCCTTACCGAATGGTGATTGTTCTGCGGCTTGTGATTCTTTGTTTTTTCTTGCACTACCGGATAACGAATCCAGTACGCAATGCATACGCTCTATGGCTGATATCTGTTATATGTGAGATTTGGTTTGCAATATCCTGGATATTGGATCAGTTCCCAAAGTGGCTTCCTGTAAACCGTGAGACATATCTCGATCGGCTTGCATTAAGATATGATAGGGAAGGAGAGCCATCACAGCTTGCTGCTGTTGACATTTTTGTGAGTACAGTTGACCCACTGAAGGAGCCTCCACTAGTCACCGCCAACACTGTGCTATCTATTCTCGCTGTTGACTACCCAGTTGACAAGGTCTCATGCTATGTCTCTGATGATGGAGCTGCCATGTTGACATTCGAAGCATTATCCGAGACATCAGAGTTTGCAAGGTCGTGGGTGCCTTTCTGCAAGAAATACAGCATTGAGCCTCGGGCTCCAGAATGGTACTTTGCTCAGAAAATTGATTACTTGAAGGATAAAGTCCATCCATCATTTGTCAAAGATCGAAGAGCGATGAAGAGAGAATACGAGGAATTTAAGGTTCGCATCAACGGTCTGGTATCAAAGGCACAGAAGGTTCCCGAAGAAGGATGGATCATGCAAGATGGAACTCCGTGGCCTGGAAATAATACTAGAGACCATCCGGGAATGATCCAGGTTTTCTTAGGCCAAAATGGTGGACTGGATTCCGAAGGTAACGAGTTGCCTCGTTTAGTCTATGTATCTCGTGAAAAACGTCCAGGATTCCAACATCATAAGAAAGCCGGTGCAATGAATGCTCTTGTTCGAGTGTCTGCTGTCCTTACTAATGGCCCGTTCTTGTTGAATCTTGACTGTGATCATTACATAAACAATAGCAAGGCATTGAGAGAAGCTATGTGTTTCATGATGGATCCAAACCTTGGCAAATACGTCTGTTATGTTCAGTTTCCTCAAAGATTTGACGGTATTGATAAGAATGATCGATATGCTAACCGTAATACTGTTTTCTTTGATATAAATTTAAGAGGTTTAGATGGCCTTCAAGGTCCAGTTTATGTGGGTACTGGATGTGTCTTCAACAGAACTGCATTGTATGGTTATGAACCTCCTCACAAACCGAAGCATCGGAAACCAGGGTTTCTTTCATCGCTCTGTGGCGGTTCTCGAAAGAAGAGGTCAAAATCAAGTATAAAGAGTCCCGACAAGAAGAAATCAAGCAAGCATGTGGACCCGACTGTGCCGATTTTCAATCTCGATGACATTGAAGAAGTGGTTGAAGGTGCTGGATATGATGATGAGAAGTCACTGCTAATGTCGCAAATGACCCTGGAGCAACGGTTTGGCCAGTCTGCTGTTTTTGTTGCCTCAACCCTTATGGAAAACGGCGGCGTTCCTCAATCTGCAACACCTGAGTCTCTTCTGAAGGAGGCTATTCATGTTATCAGCTGTGGATATGAAGACAAAACTGACTGGGGATCTGAGATCGGATGGATCTATGGCTCTGTCACTGAAGATATTCTTACAGGATTCAAAATGCATGCCCGTGGTTGGCGATCGATTTATTGCATGCCAAAGCGTCCCGCCTTTAAAGGGTCTGCACCTATTAATCTTTCAGATCGATTGAACCAAGTGCTTCGATGGGCCCTCGGTTCTGTGGAGATTCTTCTGAGTAGGCATTGCCCTATCTGGTATGGCTATGGCGGAAGGCTCAAATGGCTCGAAAGGTTCGCATATGTGAACACTACAATCTATCCAATCACTGCCGTTCCTCTTCTCATGTATTGTACCTTACCAGCCGTGTGCCTGCTGACGAACAAGTTCATCATTCCCCAGATTAGTAACATTGCAAGTATATGGTTTATATCCCTCTTCCTCTCCATTTTCGCGACTGGAATTCTCGAGATGAGATGGAGCGGGGTTGGAATCGACGAGTGGTGGAGAAACGAACAATTTTGGGTCATTGGTGGCGTTTCAGCTCACCTGTTTGCTGTTTTCCAAGGTCTGCTCAAGGTTCTGGCTGGAATCGACACCAACTTCACGGTCACGTCCAAGGCATCAGATGAAGACGGGGACTTTGCCGAGCTTTACATGTTCAAATGGACGACTCTTCTCATCCCGCCAACAACACTCCTCATAGTAAACTTGGTCGGAGTTGTAGCAGGGATATCTTATGCAATCAACAGCGGATACCAATCATGGGGACCACTGTTTGGCAAGCTATTCTTCGCCTTTTGGGTGATCATTCATCTCTATCCTTTCCTGAAAGGTTTGATGGGTCGCCAAAACAGAACGCCCACCATCGTCGTCGTATGGTCGATTCTGCTTGCTTCCATCTTCTCATTGTTATGGGTGAGGATCGATCCGTTCACTACAACAGTCACAGGTCCCGACGTCGAGGAGTGTGGAATCAACTGCTAG 3273 45.55 MRAKQLAAMETGESVAKVIKNMGPNACQICGDNVGKTVDGEPFVACNVCTFPVCRPCYEYERKDGNQSCPQCKSRYKRHKGSPAVLGDEEDVELDDDDDAIDLNYISESQKQKQKIAERMMSWQMAYGQAQDLPPPNYDKEVSFNHIPLLTNGQEVSGELSAASPEHHSMASPGHPRGKPIYSLPYSADINQSPNVRGVDPTKEYNSSGLGNVAWKERVDGWKMKQEKNAVPMSTAHAASERGGGDIDACTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCFFLHYRITNPVRNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARSWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRINGLVSKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTALYGYEPPHKPKHRKPGFLSSLCGGSRKKRSKSSIKSPDKKKSSKHVDPTVPIFNLDDIEEVVEGAGYDDEKSLLMSQMTLEQRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYVNTTIYPITAVPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTTVTGPDVEECGINC 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46316711 46322846 + Maker00013871 Lcy3g1908 629100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1908 1090 MobiDBLite consensus disorder prediction 655 696 - -
Lcy3g1908 1090 Pfam Zinc-binding RING-finger 18 91 IPR027934 -
Lcy3g1908 1090 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 269 1059 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lcy3g1908 1090 Pfam Cellulose synthase 362 1083 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lcy3g1908 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 101 IPR013083 -
Lcy3g1908 1090 FunFam Cellulose synthase 479 653 - -
Lcy3g1908 1090 CDD mRING-HC-C4C4_CesA 27 75 - -
Lcy3g1908 1090 SUPERFAMILY RING/U-box 14 97 - -
Lcy3g1908 1090 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 903 IPR029044 -
Lcy3g1908 1090 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 500 653 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0192 Lcy-Chr2:1503640 Lcy3g1908 Lcy-Chr3:46316711 0 dispersed
Lcy3g1447 Lcy-Chr3:41225149 Lcy3g1908 Lcy-Chr3:46316711 0 dispersed
Lcy3g1908 Lcy-Chr3:46316711 Lcy9g1827 Lcy-Chr9:43369630 0 dispersed
Lcy3g1908 Lcy-Chr3:46316711 Lcy1g1957 Lcy-Chr1:23473829 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1908 K10999 - csv:101206590 2097.01