Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1914 ATGGCAGCAAACAAAATCAAATCAAAACAATGGCACGTTTCCATTTCCCAAGGCACGGAGTTGGAAAGTGGGACCCATCCACATGGGTCAGCGGTCAGCCCTGCCCGCTCATACACAGCCCAGGAAGCGGCCCAATTGCCACCATATAAAATCCCAATTTACGATTCCACGGACTTCAATTGGTCGGATTCGTTGTTGGTTCCATTATTCTCATTTCTAGATCAAGATCTGGAAGAATTAACCATGGCTGATCAGGTTCAACATCCCACCATTTATCAGAAGGTTGCTGGTCAGCTTTCCCTTCAGTCGAGGGTTGCTTCAGGTTTTCGTGCTGGTGATGATGGCTTTAGGAACCCTGCACTTTACCAGAGACGTGCTTCAGTCAGCAATTATTCAAATGCTTCTTTCCAATATCCTGCCATGCAATCCTGTGTTGCTACGACTGATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTCGTCGCCGCCCCTGCAGAGAAAGGAAACTTTCTGATTGACTTTCTTATGGGTGGTGTGTCTGCCGCTGTATCCAAGACAGCCGCTGCCCCGATTGAGCGTGTTAAACTCTTAATCCAAAATCAGGATGAGATGATTAAAGCTGGACGTCTGTCTGAGCCATACAAGGGTATTGGTGACTGTTTTAAACGTACAATTCAAGAGGAGGGTTTCGGTTCATTGTGGAGAGGAAACACTGCCAATGTTATCCGTTATTTCCCCACTCAAGCATTGAACTTTGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAGGACAAGGACGGTTACTGGAAATGGTTTGCCGGTAACCTGGCATCCGGTGGTGCAGCTGGTGCTTCGTCCCTTCTCTTTGTTTACTCTCTTGACTATGCCCGTACCCGGTTGGCAAACGATGCCAAGGCTGCCAAGAAAGGTGGTGAAAGACAATTCAATGGACTGGTTGATGTCTACAGAAAGACATTGCAGTCTGATGGTGTTGCTGGTCTTTACCGTGGATTTAACATTTCTTGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGATTCTTTGAAGCCCGTTGTCTTGACCGGAAAGTTGCAGGTCAGTTTGCTTGTGATTCCAGTTGTTTTCTTTGTGTATAGTTTGTTTATAGATGAGATCGATGTATGCATGGAGATGTACCTAACATTCAGTCCTGTATCTGTCATCCTGCAGGATAGCTTCTTTGCTAGCTTTGCCCTTGGTTGGCTCATCACCAACGGTGCCGGGCTTGCATCCTACCCAATTGACACCGTTCGTAGAAGAATGATGATGACATCTGGTGAAGCAGTCAAGTACAAGAGCTCAATGGATGCCTTCTCTCAGATCTTGAAGAACGAAGGTGCCAAGTCTCTGTTCAAGGGTGCTGGTGCCAACATTCTGCGTGCCGTTGCGGGTGCTGGTGTGCTTGCCGGTTACGACAAGTTGCAGAGCGAAACCCTCTCTCCGCCTGAAATATTCGCTCATATCGAACGCGACATTCTAGCCGCGGCGGACTCCTCCAAAATTTCCTCGCGGCCATCAGTTTTCTCCCAAGTTGCTCTTTTGGAAGAATTAGCCATGGCTGATCAGGTTCAACATCCCACCATCTTTCAGAAGGTTGCTGGTCAGCTTTCCCTTCAGTCAAGGGTTGCTTCAGGTTTCCGTGCTGGTGATGATGGCTTTAGGAACTCTGCCCTTTACCAGAGACGTGCTTCAGTCAGCAATTATTCAAATGCTGCTTTCCAATATCCTGCCGTGCAATCCTGTGTTGCTACAACTGATCTTTCTAGGGTTGCCTCAACTGCCTCCCCCATTTTCGTCGCTGCCCCTGCAGAGAAAGGGAACTTTCTGATTGATTTTCTTATGGGTGGTGTGTCTGCCGCTGTATCCAAGACAGCCGCTGCCCCGATTGAGCGTGTTAAACTCTTAATCCAAAATCAGGATGAGATGATTAAAGCTGGACGTCTGTCTGAGCCATACAAGGGTATTGGTGACTGTTTTAAACGTACAATTCAAGAGGAGGGTTTCGGTTCATTGTGGAGAGGAAACACTGCCAATGTTATCCGTTATTTCCCCACTCAAGCATTGAACTTTGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAAGGACGGTTATTGGAAATGGTTTGCCGGTAACCTGGCATCCGGTGGTGCAGCTGGTGCTTCGTCCCTTCTCTTTGTTTACTCTCTTGACTATGCCCGTACCCGGTTGGCAAACGATGCCAAGGCTGCCAAGAAAGGTGGTGAAAGGCAATTCAATGGACTGGTTGATGTATACAGAAAGACATTGCAGTCTGATGGTGTTGCTGGTCTTTACCGTGGATTTAACATTTCTTGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGATTCTTTGAAGCCCGTTGTCTTGACCGGAAAGTTGCAGGTCAGTTTGCTTGTGATTCCAGTTGTTTTCTTTGTGTATAGTTTGTTTATAGATGAGATCGATGTATGCATGGAGATGTACCTAACATTCAGTCCTGTATCTGTCATCCTGCAGGATAGCTTCTTTGCTAGCTTTGCCCTTGGTTGGCTCATCACCAACGGTGCCGGGCTTGCATCCTACCCAATTGACACCGTTCGTAGAAGAATGATGATGACATCTGGTGAAGCAGTCAAGTACAAGAGCTCAATGGATGCCTTCTCTCAGATCTTGAAGAACGAAGGTGCCAAGTCTCTGTTCAAGGGTGCTGGTGCCAACATTCTGCGTGCCGTTGCGGGTGCTGGTGTGCTTGCCGGTTACGACAAGTTGCAGGTGATCGTCTTGGGGAAGAAATACGGATCTGGTGGCGTCGATTGGATCCTCCGTGACTCCTCAGGGTCTTCGATCTGTGTGGGCTTCCTTTCAGTTGCGGATCTTCGTCCCTCTCTAAGCTCCATATCTCTGTTGGTGGAGTCGGATGCTTCCTCTGTGGTGAATCTCCTCAACGAAGAAGATGAAGATTTTACAGAAATCTCCTTCCTCATTCAGGAGATCTCAAGATTGAAGAAGAACTTTAAAGAACTTTCTTTCTTGTATTGCCCCAGAGATCAAAATGTTGCCGCGGATTTATTGGCGCGCGTGGCGATCTCGTTCCCTTCCCTTGTTCCTGTTTTGGACTCCTCTCCCATGGTGGAAGAGGGTTTGGGTTTTTGGTATGGGCCTCCCCCATCTTGTATTAAAAGCCTCTTAAATGAGGTTGGTGTTCTTGATTTTTCTTCTTTTTAA 3315 46.91 MAANKIKSKQWHVSISQGTELESGTHPHGSAVSPARSYTAQEAAQLPPYKIPIYDSTDFNWSDSLLVPLFSFLDQDLEELTMADQVQHPTIYQKVAGQLSLQSRVASGFRAGDDGFRNPALYQRRASVSNYSNASFQYPAMQSCVATTDLSRVASTASPIFVAAPAEKGNFLIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFKRTIQEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQVSLLVIPVVFFVYSLFIDEIDVCMEMYLTFSPVSVILQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSMDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQSETLSPPEIFAHIERDILAAADSSKISSRPSVFSQVALLEELAMADQVQHPTIFQKVAGQLSLQSRVASGFRAGDDGFRNSALYQRRASVSNYSNAAFQYPAVQSCVATTDLSRVASTASPIFVAAPAEKGNFLIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFKRTIQEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLQSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQVSLLVIPVVFFVYSLFIDEIDVCMEMYLTFSPVSVILQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSMDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVLGKKYGSGGVDWILRDSSGSSICVGFLSVADLRPSLSSISLLVESDASSVVNLLNEEDEDFTEISFLIQEISRLKKNFKELSFLYCPRDQNVAADLLARVAISFPSLVPVLDSSPMVEEGLGFWYGPPPSCIKSLLNEVGVLDFSSF 1104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46367531 46378294 - Maker00014165 Lcy3g1914 629106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1914 1104 Gene3D Mitochondrial carrier domain 630 963 IPR023395 -
Lcy3g1914 1104 PRINTS Mitochondrial carrier protein signature 174 187 IPR002067 GO:0055085(InterPro)
Lcy3g1914 1104 PRINTS Mitochondrial carrier protein signature 421 443 IPR002067 GO:0055085(InterPro)
Lcy3g1914 1104 PRINTS Mitochondrial carrier protein signature 237 257 IPR002067 GO:0055085(InterPro)
Lcy3g1914 1104 PRINTS Mitochondrial carrier protein signature 289 307 IPR002067 GO:0055085(InterPro)
Lcy3g1914 1104 PRINTS Mitochondrial carrier protein signature 187 201 IPR002067 GO:0055085(InterPro)
Lcy3g1914 1104 ProSiteProfiles Solute carrier (Solcar) repeat profile. 169 262 IPR018108 -
Lcy3g1914 1104 CDD RNase_H_like 963 1056 IPR044730 -
Lcy3g1914 1104 Gene3D - 981 1061 IPR036397 GO:0003676(InterPro)
Lcy3g1914 1104 ProSiteProfiles Solute carrier (Solcar) repeat profile. 412 498 IPR018108 -
Lcy3g1914 1104 Gene3D Mitochondrial carrier domain 172 499 IPR023395 -
Lcy3g1914 1104 ProSiteProfiles Solute carrier (Solcar) repeat profile. 870 956 IPR018108 -
Lcy3g1914 1104 Pfam Reverse transcriptase-like 997 1056 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lcy3g1914 1104 PRINTS Adenine nucleotide translocator signature 171 183 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Lcy3g1914 1104 PRINTS Adenine nucleotide translocator signature 215 236 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Lcy3g1914 1104 PRINTS Adenine nucleotide translocator signature 248 260 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Lcy3g1914 1104 PRINTS Adenine nucleotide translocator signature 274 287 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Lcy3g1914 1104 PRINTS Adenine nucleotide translocator signature 417 433 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Lcy3g1914 1104 ProSiteProfiles Solute carrier (Solcar) repeat profile. 274 366 IPR018108 -
Lcy3g1914 1104 SUPERFAMILY Mitochondrial carrier 627 952 IPR023395 -
Lcy3g1914 1104 ProSiteProfiles Solute carrier (Solcar) repeat profile. 732 824 IPR018108 -
Lcy3g1914 1104 Pfam Mitochondrial carrier protein 870 958 IPR018108 -
Lcy3g1914 1104 Pfam Mitochondrial carrier protein 169 266 IPR018108 -
Lcy3g1914 1104 Pfam Mitochondrial carrier protein 274 367 IPR018108 -
Lcy3g1914 1104 Pfam Mitochondrial carrier protein 732 825 IPR018108 -
Lcy3g1914 1104 Pfam Mitochondrial carrier protein 412 496 IPR018108 -
Lcy3g1914 1104 Pfam Mitochondrial carrier protein 627 724 IPR018108 -
Lcy3g1914 1104 ProSiteProfiles Solute carrier (Solcar) repeat profile. 627 720 IPR018108 -
Lcy3g1914 1104 SUPERFAMILY Mitochondrial carrier 169 494 IPR023395 -
Lcy3g1914 1104 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 625 964 IPR002113 GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1914 Lcy-Chr3:46367531 Lcy4g0669 Lcy-Chr4:8108333 5.48E-189 dispersed
Lcy3g1914 Lcy-Chr3:46367531 Lcy9g0915 Lcy-Chr9:30715234 2.44E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1914 K05863 - csv:101203733 688.723