Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1915 ATGACAGACCCTAATTACTCCAATTTCTTCTCTCCCAATTCCTTCACCTTCATCCCTCTTCCTCCTTCCCCTTCCAATTTCCCCGCCTCCCAATGCCGCCCTCCGCCGCCCTCCTCTCCGCCGCAGGCCCTCCCTCTCCTCAACACCCTCTCGCCGGAAACCACCGATAATCACCCCTCCTCCTCCACCACCCCAGATGACGAAACTACCCTCGCCCTCGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTCGACTACTCCCACTCCTTCTCCCCGGACCCCGCCGGAAAACTTCTCGACGGCGACCTCTCCGGCCACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCGACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCACATGTGGGGGCATGGTTCTCAATACAGAAAAGGACCAGAGTCCCTAAAAGGAACACAGCCAACCGCAATGCTACGGTTGCCGTGCTACTGCTGCGCGCCGGGATGCAAACACAACATCGACAACCCGAGGTCGAGGCCGCTCAAGGACTTTCGCACCCTCCAAACACATTACAAGCGAAAGCACGGCATCAAGCCCTTCACATGTAGAAAATGCAGCAAGGCCTTCGCCGTGAAAGGCGATTGGCGAACGCACGAGAAGAATTGCGGGAAGATTTGGTATTGTTTTTGTGGCTCTGACTTCAAACACAAGCGCTCGCTCAAGGACCACATCAAGGCCTTCGGGCGTGGCCATGGTGCCCTAGGCCTCGACTACTTTGAGGACGAAAACGAACCCGCATCCGAAGTCGAACACGAAGGCGTCGTCATCCATTGA 879 55.75 MTDPNYSNFFSPNSFTFIPLPPSPSNFPASQCRPPPPSSPPQALPLLNTLSPETTDNHPSSSTTPDDETTLALDFSLSCPSSDLDYSHSFSPDPAGKLLDGDLSGHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFEDENEPASEVEHEGVVIH 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46395653 46398638 + Maker00014300 Lcy3g1915 629107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1915 292 MobiDBLite consensus disorder prediction 21 68 - -
Lcy3g1915 292 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 214 238 - -
Lcy3g1915 292 MobiDBLite consensus disorder prediction 44 68 - -
Lcy3g1915 292 PANTHER ZINC FINGER PROTEIN WIP2 113 287 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Lcy3g1915 292 FunFam Zinc finger protein WIP2 184 266 - -
Lcy3g1915 292 Gene3D Classic Zinc Finger 193 265 - -
Lcy3g1915 292 SUPERFAMILY beta-beta-alpha zinc fingers 198 235 IPR036236 -
Lcy3g1915 292 SUPERFAMILY beta-beta-alpha zinc fingers 124 153 IPR036236 -
Lcy3g1915 292 SMART c2h2final6 215 235 IPR013087 -
Lcy3g1915 292 SMART c2h2final6 131 153 IPR013087 -
Lcy3g1915 292 Gene3D Classic Zinc Finger 130 153 - -
Lcy3g1915 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Lcy3g1915 292 MobiDBLite consensus disorder prediction 21 43 - -
Lcy3g1915 292 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1915 Lcy-Chr3:46395653 Lcy5g1135 Lcy-Chr5:24245473 1.09E-104 dispersed
Lcy3g1915 Lcy-Chr3:46395653 Lcy5g0658 Lcy-Chr5:8156638 9.10E-112 wgd
Lcy3g1915 Lcy-Chr3:46395653 Lcy8g2102 Lcy-Chr8:47205856 4.02E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19884 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1915 - - - 0.0