Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1945 ATGGAGCTTGGCCTGAGCTTAGGCGACGCCCCCAAGCCCTTCCGTTTCGTCGACAAGCAACCGCAACCACCACCGCCGCAGCGCGGTCTTTCCCATCCAGATTTAGGGTTCTGCGTCGACCTATCGATCGGCCGTCCGGTTGCCGGAGAGAAAGAAGACGACGAAGAAAAACCTAATCAGAGAGAAGACGAATCCGACGGAAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCACAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGATGAGGGCGAAGACCGAGCCGCATCGCCGAACAGCGCTGCGTCGTCGTTTCAGATGGAATTTGGACTGTACGGCGGCGGAGGGAACATTTCTTGCCGGAGAGATCAAATGGAAAATGGCGTAATGAACGAAGTGGGCGAATCTGAGAGAGCGTCATCACGAGCGAGCGACGAAGACGAAAATGGCTCAACGAGGAAGAAACTCAGACTCTCAAAAGAACAATCCGCCTTCCTCGAAGAAAGCTTCAAAGAACACAACACCTTGAACCCTAAACAGAAACTGGCACTGGCCAAGCAATTGAATCTTCGTCCTCGCCAAGTGGAAGTCTGGTTTCAAAACAGAAGAGCCAGGACGAAATTGAAGCAGACGGAGGTGGATTGTGAGTATTTGAAAAGATGCTGCGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAAGCACAAACTCATTCTACATGCAATTACCAGCCACAACACTGACCATGTGCCCGTCTTGTGAAAGAGTGACCTCAACGTCGGCCTCCACCGGCAGCGCCAGCGCAGGCGGAGGAAAATCGACGGAGGCGGTTACAAAACGATCTGGGTTCGCCATTGCAGGGAGAGGCAGTTCATCCTCTTTCCCATTTTCTGCAAAAACGCAGTCCCACCAGTCAACAGCTTCATGA 996 51.51 MELGLSLGDAPKPFRFVDKQPQPPPPQRGLSHPDLGFCVDLSIGRPVAGEKEDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRAASPNSAASSFQMEFGLYGGGGNISCRRDQMENGVMNEVGESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKSTNSFYMQLPATTLTMCPSCERVTSTSASTGSASAGGGKSTEAVTKRSGFAIAGRGSSSSFPFSAKTQSHQSTAS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46602999 46605131 - Maker00014570 Lcy3g1945 629137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1945 331 FunFam Homeobox-leucine zipper protein 18 150 227 - -
Lcy3g1945 331 MobiDBLite consensus disorder prediction 308 331 - -
Lcy3g1945 331 Gene3D - 170 220 - -
Lcy3g1945 331 MobiDBLite consensus disorder prediction 145 169 - -
Lcy3g1945 331 SMART halz 222 265 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g1945 331 MobiDBLite consensus disorder prediction 151 169 - -
Lcy3g1945 331 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy3g1945 331 CDD homeodomain 166 223 IPR001356 GO:0003677(InterPro)
Lcy3g1945 331 Pfam Homeodomain 166 220 IPR001356 GO:0003677(InterPro)
Lcy3g1945 331 SUPERFAMILY Homeodomain-like 158 223 IPR009057 -
Lcy3g1945 331 SMART HOX_1 164 226 IPR001356 GO:0003677(InterPro)
Lcy3g1945 331 MobiDBLite consensus disorder prediction 46 68 - -
Lcy3g1945 331 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 55 291 IPR050762 -
Lcy3g1945 331 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy3g1945 331 MobiDBLite consensus disorder prediction 283 331 - -
Lcy3g1945 331 Coils Coil 228 258 - -
Lcy3g1945 331 MobiDBLite consensus disorder prediction 1 114 - -
Lcy3g1945 331 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677(InterPro)
Lcy3g1945 331 MobiDBLite consensus disorder prediction 283 297 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0336 Lcy-Chr2:2770043 Lcy3g1945 Lcy-Chr3:46602999 8.25E-50 dispersed
Lcy3g1945 Lcy-Chr3:46602999 Lcy6g1074 Lcy-Chr6:11853768 2.21E-65 dispersed
Lcy11g2096 Lcy-Chr11:44455520 Lcy3g1945 Lcy-Chr3:46602999 1.07E-53 transposed
Lcy5g0586 Lcy-Chr5:6679979 Lcy3g1945 Lcy-Chr3:46602999 1.11E-92 transposed
Lcy9g2388 Lcy-Chr9:48144537 Lcy3g1945 Lcy-Chr3:46602999 1.54E-20 transposed
Lcy12g0488 Lcy-Chr12:5898735 Lcy3g1945 Lcy-Chr3:46602999 4.76E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19887 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1945 K09338 - csv:101221600 549.28