Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1947 ATGTTAAACAGCATTGTAAAGCAGAATATTAAAAGAGAATTGGGCAAAGGAAATCACATCTCTTTTTGGCATGATGTCTGGATCCAAAATCACACTTTGGCTTCTTTATATCCAAGACTGTACAGACTTTCCACAAGTACTCATGCTTCGGTGGCCAATGTATGGAAAGCTGATAATGGAGTTTGGGACATGGGTTTCAGGAGAAACCTAAATGATTCTGAAATAGTTGAATGGGCCTCCTTGTCTCATTGCCTTTCATCTGTTGTTTTAAAAAATAACAATGACTCGTGGAGTTGGAATTATAGATCATCTAAAACTTTTTCAGTCCATTCGATGATGGAGGTTTTAACACTACGGGGAGGTTATTCTATAGAACCTTTATATTCAGTTATATGGAAAGGATCTTATCCCCAGAAAATTAAGATTTTCCTATGGGAGCTTAGCCATAGTGGTTTTAACACCATGGATCGCCTTCAACAACGACAACCTTATCTCTCCCTTTCACCTTCATGTTGTATTATGTGTTTTGCAAGTTCAGAATCTCCATGTCATCTCTTCGGTTATTGTTCCTTTGCTCAACAATATTGGAATTTTATTCCGACGGCCTTTGGATGGAATACAGTTCTACCTGGAAATATTTTCGACCTCTTATCTATGGTTTTTGTGGGTCACCCTCTCAAAGGGGATGCGAAAACCCTTTGGATGGCTATTAATCGATCCTTTTTCTGGACTCTTTGGAATGAACGGAACGGGAGGATCTTTAATGACACCATTGGATCTTTTGATGGTTTCAACTCCACCTTGCGTGAAGGTAATGTTACTCATCATGAATACATACAAGTTGGTAAAGGGAGAGATGTTGGCCTTAACCAGATCTCCATGTTTGAGGCTAAGATAGCCAATGGTAATGGTGAACAGACATTAAGCCGTGACATATACAGGCTAGGTCACCGGTTTGATTTTTTTCGCATGCTATCTTGTTACTTCACCACCATTGGTTTCTATTTCAGTACTATGCTGACTGTGCTCACAGTCTATGTCTTTCTATATGGCCGCCTTTACCTCGTTCTCAGTGGCCTTGAAAAACAATTGAGTACTCATCCTGCCATTAAAGACAACAAGTCCCTTCAAACAGCTCTTATTTCTCAGTCCGCTGTGCAAATTGGACTTCTGATGGCATTGCCTATGATGGTTGAAATTGGACTGGAAAGGGGCTTTCGGGCAGCTTTAAGTGATTTCATACTAATGCAGCTTCAGCTTGCCCCTGTGTTTTTCACATTCTCTTTGGGAACTAAGACGCATTATTATGGAAGGACATTGCTTCACGGGGGTGCACAGTACAGAGGTACAGGTCGTGGCTTTGTGGTGTTCCATGCAAAATTTGCAGACAATTACAGGATGTATTCTCGCAGCCATTTTGTCAAAGGAATTGAATTGATGATTCTTCTTATCGTTTACCACATACTTGGAGTTTCATATAGAGGTGTGGTTGCTCATGTATTGATCACCATATCAATATGGTTTATGGTAGGAACGTGGCTTTTTGCTCCTTTCCTCTTCAATCCATCAGGCTTTGAGTGGCAAAAGATAGTTGATGACTGGACAGATTGGAAAAAATGGATAGTCAACCGTGGAGGAATCGGGGTATCTCCTGATAAAAGTTGGGAGTCTTGGTGGGAAAAGGAACATGAACATCTACTTTACTCTGGAAAGCGTGGCATCTTTGTTGAGATATTACTGTCACTACGATTTTTCATTTTTCAGTATGGACTAGTATATCACTTGAAAATAATCGACTCCCAAAGTTTTCTGGTTTATGGCCTTTCCTGGGTTGTGATCATTTCAATATTGCTCCTGATGAAGGCTGTATCCGTTGGACGACGTAAATTCAGCGCTAGCTTTCAGTTGTTATTTCGGCTGGCCGAGGGTTTTATTTTCATTATCTGTGTAGCTGGTTTCATTACTTTAGTTGCAGTGCCTCATATGACAATCAGGGACATCATACTTTGCCTTCTTGCCTTCTTGCCAACAGGATGGGGCCTGCTCTTGATTGCACAAGCTTGTAAGCGCTTAATTCATCATACTGCATTATGGGGATCTGTTCGTGCCCTGGCTCGGAGTTATGAAATTCTCATGGGCTTGCTTCTCTTCACACCTGTAGCATTCCTGGCCTGGTTTCCATTCGTTTCGGAGTTCCAGACACGAATGCTGTTCAACCAAGCATTCAGCAGAGGTTTGCAAATTTCTCGTATTCTTGGCGGGCCTAGGAAGAAGGAAAAGAGTTCCTCCACAGACAAAGAGTAA 2304 41.36 MLNSIVKQNIKRELGKGNHISFWHDVWIQNHTLASLYPRLYRLSTSTHASVANVWKADNGVWDMGFRRNLNDSEIVEWASLSHCLSSVVLKNNNDSWSWNYRSSKTFSVHSMMEVLTLRGGYSIEPLYSVIWKGSYPQKIKIFLWELSHSGFNTMDRLQQRQPYLSLSPSCCIMCFASSESPCHLFGYCSFAQQYWNFIPTAFGWNTVLPGNIFDLLSMVFVGHPLKGDAKTLWMAINRSFFWTLWNERNGRIFNDTIGSFDGFNSTLREGNVTHHEYIQVGKGRDVGLNQISMFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYFTTIGFYFSTMLTVLTVYVFLYGRLYLVLSGLEKQLSTHPAIKDNKSLQTALISQSAVQIGLLMALPMMVEIGLERGFRAALSDFILMQLQLAPVFFTFSLGTKTHYYGRTLLHGGAQYRGTGRGFVVFHAKFADNYRMYSRSHFVKGIELMILLIVYHILGVSYRGVVAHVLITISIWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWKKWIVNRGGIGVSPDKSWESWWEKEHEHLLYSGKRGIFVEILLSLRFFIFQYGLVYHLKIIDSQSFLVYGLSWVVIISILLLMKAVSVGRRKFSASFQLLFRLAEGFIFIICVAGFITLVAVPHMTIRDIILCLLAFLPTGWGLLLIAQACKRLIHHTALWGSVRALARSYEILMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGPRKKEKSSSTDKE 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46639335 46643829 - Maker00013975 Lcy3g1947 629139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1947 767 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 261 757 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Lcy3g1947 767 Pfam zinc-binding in reverse transcriptase 107 196 IPR026960 -
Lcy3g1947 767 Pfam 1,3-beta-glucan synthase component 261 571 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0666 Lcy-Chr2:5681417 Lcy3g1947 Lcy-Chr3:46639335 2.54E-46 dispersed
Lcy3g1947 Lcy-Chr3:46639335 Lcy4g0778 Lcy-Chr4:9287152 6.39E-234 dispersed
Lcy5g1602 Lcy-Chr5:37646486 Lcy3g1947 Lcy-Chr3:46639335 2.49E-23 dispersed
Lcy11g1140 Lcy-Chr11:33739565 Lcy3g1947 Lcy-Chr3:46639335 5.85E-22 transposed
Lcy2g1149 Lcy-Chr2:11482811 Lcy3g1947 Lcy-Chr3:46639335 5.33E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1947 K11000 - csv:101221120 959.518