Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g1965 | ATGTGTGTGTGTGCGCCCCTTCGCCGCCCCAATTCCGCCACCGCCGGCCACCGTCCCATCTCATCTCCAGGAGCCGGACTTTTGTTGGGTGAGGGGACTCCGGTGAATATCATTGTCGGATCACATGTTTGGGTTGAAGATTCCGAGGATGCTTGGATTGATGGTCAAGTTACAGAAATTAATGGCAAAAATGCCACCATAATCACCACCAGTGAAAAAACTATTGTTGCAGAAATTTCGAGCATATATCCGAAAGACACGGAGGCGCCGCCGGCTGGAGTTGACGACATGACGAAATTGGCGTACCTCCATGAACCTGGAGTTCTGCACAATCTAGCTTGTCGGTTTTCTCTCAATGAGATATACACTTACACCGGGAATATTCTAATTGCGGTAAATCCTTTCCGGAGACTGCCGCATTTGTATGACATTCACATGATGGAGCAGTACAAAGGGGCTACTTTCGGCGAGCTCAGTCCACATCTTTTCGCTGTTGCAGATGCTTGCTACAGATCAATGATTAATGAGCAAGGAAGTCAGTCCATATTAGTAAGTGGAGAGAGTGGTGCTGGTAAAACTGAGACGACAAAGATGCTCATGAGATATCTTGCATTCATGGGAGGCAGATCAGATACTGAAGGAAGAACAGTCGAACAACAGGTTTTGGAGGTGAGCAACATGACTGCAACATTTATTGTACTTGTCCAACCCTGTATTGGAAGCATTTGGAAATGCCAAAACCGTCAAAAACAACAATTCAAGGATGTCAAGAAATACAAGTTAGGAGACCCGAGGACATTTCATTATCTTAATCAAACGAATTGTTATGATGTGGCAAATGTTGATGATTCAAGAGAGTACTTAGAGACAAGAAATGCCATGGATGTTGTTGGAATCAGCCAGGACGAACAGGATGCTATATTTCGTGTTGTAGCTGCGATATTGCATCTTGGAAACATTGACTTCATGAAAGGGAAGGAAGTTGACTCCTCTAAAGTGAAAGACGAGAAATCAAATTATCATCTTCAAACAGCAGCAGAGCTACTCATGTGTGATGTAAAGGCACTGGAACATTCGCTCTGCCAGCGTGTCATAGTGACTCCTGATGGTAAAATTACAAAGCCATTGGATCCAGATTCAGCAGCCTTGAGTCGTGATGCATTGGCAAAAACTGTGTATTCTAGGCTGTTTGATTGGATTGTGGACAAAATTAATAGTTCAATTGGCCAAGATCCTAATGCAGCGAGCTTAATTGGTGTCCTTGATATTTATGGATTTGAAAGCTTCAAGGTCAACAGTTTTGAGCAGCTCTGTATCAACCTGACCAATGAGAAGTTGCAGCAACATTTTAATCAGCACGTTTTCAAGATGGAGCAAGAGGAGTATACAAAAGAAGAAATAAACTGGAGCTATGTTGAGTTTGTAGATAATCAGGATGTCCTTGATCTTATTGAGAAGAAACCTGGAGGTATAATCGCCCTGCTTGATGAAGCCTGTATGTTTCCAAAGTCAACACATGAAACATTTGCTCAAAAGATGTATCAGACGTACAAAGCACATAAGCGGTTCAGCAAGCCAAAACTTGCTCGAACAGACTTCACAATAAACCATTATGCTGGAGATGTTACATACCAAGCAGATCAATTTCTCGATAAAAACAAGGACTATGTAGTAGCAGAACATCAGGCTCTTCTGAATGCCTCACAATGCTCTTTTGTTGCTAATCTTTTCCCTCCACTTCCTGAGGAAAGCTCAAAGCAATCCAAGTTCTCCTCTATTGGTACTCGGTTCAAGCAACAATTACAAGCTCTCATGGAAACATTGAATACTACAGAACCACATTATATTAGATGTGTAAAGCCCAACACAGTCTTGAAGCCAGGAATCTTTGAAAACTTCAATGTGTTGAACCAATTGAGGTGTGGGGGAGTGCTCGAGGCAATTAGAATAAGCTGTGCCGGATATCCAACAAAAAGAACATTTGACGAGTTCCTTGATCGTTTTGGAATGCTTGCTCCAGATATTTCGGATGGGTCTGATGAAAAATCAGCATGCATTGCAATATGTGACAGAATGGGCTTAAAGGGTTATCAGATTGGAAAAACAAAAGTGTTTCTCAGAGCTGGACAAATGGCTGAGTTGGATGCACGACGAACTGAAATATTGGCCAATGCTGTCAGGCGCATCCAGCGGCAAATCCGAACCCACCTAACTAGAAAAGAGTTTATCGCCTTAAGGAAAGCTGCAATTCATATGCAGAAACTTTGGAGAGCGCAACTTGCTTGTCAGCTGTATGAGCAGATGAGGAGAGAAGCAGCTTCAATCCGTATACAGAAGCATGCACGTGCTCACGCAGATAGAAAATCTTACAAAAAATTACTTGCATCAGCTATAGTTATTCAAACTGGTATGCGAGCAATGGCAGCTAGAAATGAGTACAGACACAGAAGAAGAACAAAGGCAGCTATCATTGTTCAGACTGAATGGCGAAGGGCATCAGCTATTTCAGCTTACAAACAGCAGCAGAAGGCAACTCTTTCCCTTCAATGCCTCTGGCGAGCTAAAGTTGCAAGGAAGGAGCTTAGAAAACTAAGGATGGCTGCAAGAGAAACAGGGGCACTCAAGGAGGCTAAGGACAAATTGGAGAAGCGTGTCGAGGAGCTAACATGGCGCCTAGAATTTGAGAAGCACTTGAGGATGGATGTTGAAGAAGCCAAGGGGCAAGAGGTTGGAAAGTTACAAAGTGCTTTGGAAGAAATGCAAGGCCAGCTGGATGAAGCTAATGCTGCAATCATACGTGAGAGAGAAGCAGCAAAATTGGCCATAGAACAAGCTCCACCAGTCATTAAGGAAGTACCTGTGGTTGACGAGACCAAGCTGGAAATGCTGAGAAATCACAATGAAGAACTTGAGGGGGAGGTTGGAGAGCTGAAGAAGAAAATTGAGGAATTCGAAGAAAAGTTTACTGAAGTGGAAAAGGAGAGTAAAGCTAGACTCAAGGAGGCAGAAGAGGCACAATTGAAATCTATGCAACTTCAAGAGACTATTGAGAGATTGGAATTAAATTTATCTAGCCTCGAGTCTGAGAACCAGGTTCTCCGCCAGCAGGCTTTGGTTGCAGCAGACAATGAATCCCTCTCTGAAGAACTGCAAGCCCTCAAGAGTAAGATCGGAAGTTTAGAGGCAGAGAATGAAGTTCTCCGCAACAGGACAGTAGCTGTTGTGCATATGCCTACTCCCACAGAGGGGATTGCAGAAAGCAAGACTTTAGATAACGGATATCTAATAGAAGAAGAGATTAAATCAACCAAGGAACCATCTACTGTTCCAGTCCTAGCTAAACAAGGTTCGCTCACAGAAAAACAACAGGAAAATCATGACGTCCTGCTCAAGTGCTTAGCAGAAGACAAACGTTTTGACAAAGGCAGACCAGTTGCAGCTTGTATTGTCTACAAGACTCTTCTTCAATGGAGATCTTTTGAAGCAGAGAAGACAAATATATTTGACAGAATTATTCACACAATCAGATCTTCTATAGAGAGTGAAGAAAATATCAGTGATCTTGCATATTGGCTCTCAACCACTTCTACCCTCCTCTATCTTCTTCAAACTTCACTCAAGGCAACCAATACAAATACTGCAGCTTCACATCGCAACCGAGCGTCCCCTTCAACCTTATTTGGTCGTATGGCATATGGTCTTCGATCATCTTCAGTGGGTATGGGGATTTCCAGTGGATACAGTGGAATGGTGGGAAAGACAAACAATCAATCTAAAGTTGAAGCCAAGTACCCAGCACTGCTTTTTAAGCAACATCTGGCAGCATGCATTGAAAAATTGTTTGGCATGATACGTGATAATTTGAAAAAGGAAATTAGCCCTTTCTTGCATCTATGCATACAGGCACCAAGATCAGTGAGGGCCAGATCAATAAGAGGGTCTTCTAAAAATATCCATTCAAATATTGTTGCAAAACAGCAAGCATCAAGTATTCACTGGCAAAGCATTGTTAATAAGCTAGACCAGACATTGGATATAATGTCTGAAAACCATGTTCCCTCCATGATCATAAGAAAAATCTTCTTCCAGGTTTTCTCATTCATAAATGTCCAGCTCTTCAATAGCTTGTTACTACGACGTGAGTGCTGTTCCTTCAGTAATGGAGAGTACTTAAAGTTAGGTCTGCAGGAATTGGAGCAATGGTGTATCAAAGCTACTGATACGTATGCTGGTTCTTCCTGGGATGAACTTCAACACATAAGACAAGCAGTAGGATTTCTGGTGTTACACCAGAAGTCCCAGAAAAGTTTGAATGAGATTACAGATGAATTATGCCGGATACTGAGCATCCCACAGATATATCGCATAGGAACGATGTTCTGGGACGACAAATATGGAACTCAGGGATTATCTCCCGATATAATTGGAAAAATGAGAGTCCTATTGGCAGAAGACTCCATCAACATCCCAAACAACTCTTTCCTGCTTGATGTGGATTCAAGCATACCATTTTCAATAGAAGAAATAGTCCGGTCCTTTGGCGAGGTTAACCTGTCCGATGTCGACCCGCCACCACTTATACGACAAAGATCAGATTTCCATTTTCTACTGCAGCAACTGATTGAATGA | 4629 | 42.54 | MCVCAPLRRPNSATAGHRPISSPGAGLLLGEGTPVNIIVGSHVWVEDSEDAWIDGQVTEINGKNATIITTSEKTIVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGATFGELSPHLFAVADACYRSMINEQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRTVEQQVLEVSNMTATFIVLVQPCIGSIWKCQNRQKQQFKDVKKYKLGDPRTFHYLNQTNCYDVANVDDSREYLETRNAMDVVGISQDEQDAIFRVVAAILHLGNIDFMKGKEVDSSKVKDEKSNYHLQTAAELLMCDVKALEHSLCQRVIVTPDGKITKPLDPDSAALSRDALAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKVNSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKAHKRFSKPKLARTDFTINHYAGDVTYQADQFLDKNKDYVVAEHQALLNASQCSFVANLFPPLPEESSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDISDGSDEKSACIAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEILANAVRRIQRQIRTHLTRKEFIALRKAAIHMQKLWRAQLACQLYEQMRREAASIRIQKHARAHADRKSYKKLLASAIVIQTGMRAMAARNEYRHRRRTKAAIIVQTEWRRASAISAYKQQQKATLSLQCLWRAKVARKELRKLRMAARETGALKEAKDKLEKRVEELTWRLEFEKHLRMDVEEAKGQEVGKLQSALEEMQGQLDEANAAIIREREAAKLAIEQAPPVIKEVPVVDETKLEMLRNHNEELEGEVGELKKKIEEFEEKFTEVEKESKARLKEAEEAQLKSMQLQETIERLELNLSSLESENQVLRQQALVAADNESLSEELQALKSKIGSLEAENEVLRNRTVAVVHMPTPTEGIAESKTLDNGYLIEEEIKSTKEPSTVPVLAKQGSLTEKQQENHDVLLKCLAEDKRFDKGRPVAACIVYKTLLQWRSFEAEKTNIFDRIIHTIRSSIESEENISDLAYWLSTTSTLLYLLQTSLKATNTNTAASHRNRASPSTLFGRMAYGLRSSSVGMGISSGYSGMVGKTNNQSKVEAKYPALLFKQHLAACIEKLFGMIRDNLKKEISPFLHLCIQAPRSVRARSIRGSSKNIHSNIVAKQQASSIHWQSIVNKLDQTLDIMSENHVPSMIIRKIFFQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCIKATDTYAGSSWDELQHIRQAVGFLVLHQKSQKSLNEITDELCRILSIPQIYRIGTMFWDDKYGTQGLSPDIIGKMRVLLAEDSINIPNNSFLLDVDSSIPFSIEEIVRSFGEVNLSDVDPPPLIRQRSDFHFLLQQLIE | 1542 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 46777971 | 46791773 | - | Maker00015286 | Lcy3g1965 | 629157 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g1965 | 1542 | ProSiteProfiles | IQ motif profile. | 793 | 822 | - | - | |
| Lcy3g1965 | 1542 | Gene3D | - | 655 | 717 | - | - | |
| Lcy3g1965 | 1542 | ProSiteProfiles | Dilute domain profile. | 1169 | 1484 | IPR002710 | - | |
| Lcy3g1965 | 1542 | CDD | MYSc_Myo11 | 106 | 707 | IPR036018 | - | |
| Lcy3g1965 | 1542 | Pfam | Myosin N-terminal SH3-like domain | 39 | 77 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1965 | 1542 | CDD | MyosinXI_CBD | 1120 | 1507 | IPR037975 | GO:0007015(InterPro) | |
| Lcy3g1965 | 1542 | Gene3D | - | 254 | 298 | - | - | |
| Lcy3g1965 | 1542 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 38 | 87 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1965 | 1542 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 300 | 589 | - | - | |
| Lcy3g1965 | 1542 | Gene3D | - | 721 | 772 | - | - | |
| Lcy3g1965 | 1542 | Gene3D | - | 773 | 820 | - | - | |
| Lcy3g1965 | 1542 | Gene3D | - | 821 | 869 | - | - | |
| Lcy3g1965 | 1542 | Gene3D | Kinesin motor domain | 42 | 232 | IPR036961 | - | |
| Lcy3g1965 | 1542 | ProSiteProfiles | IQ motif profile. | 722 | 748 | - | - | |
| Lcy3g1965 | 1542 | FunFam | unconventional myosin-Va | 821 | 868 | - | - | |
| Lcy3g1965 | 1542 | Pfam | IQ calmodulin-binding motif | 772 | 791 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1965 | 1542 | Pfam | IQ calmodulin-binding motif | 843 | 862 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1965 | 1542 | Pfam | IQ calmodulin-binding motif | 725 | 742 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1965 | 1542 | Pfam | IQ calmodulin-binding motif | 795 | 814 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1965 | 1542 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 66 | 773 | IPR027417 | - | |
| Lcy3g1965 | 1542 | SMART | DIL_2 | 1359 | 1466 | IPR002710 | - | |
| Lcy3g1965 | 1542 | Coils | Coil | 910 | 937 | - | - | |
| Lcy3g1965 | 1542 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 772 | 870 | IPR027417 | - | |
| Lcy3g1965 | 1542 | Coils | Coil | 1043 | 1070 | - | - | |
| Lcy3g1965 | 1542 | Coils | Coil | 864 | 898 | - | - | |
| Lcy3g1965 | 1542 | SMART | MYSc_2a | 86 | 720 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1965 | 1542 | Coils | Coil | 960 | 994 | - | - | |
| Lcy3g1965 | 1542 | FunFam | unconventional myosin-Va | 772 | 820 | - | - | |
| Lcy3g1965 | 1542 | ProSiteProfiles | IQ motif profile. | 745 | 774 | - | - | |
| Lcy3g1965 | 1542 | FunFam | Class V myosin | 427 | 574 | - | - | |
| Lcy3g1965 | 1542 | FunFam | Myosin XI D | 655 | 717 | - | - | |
| Lcy3g1965 | 1542 | Pfam | Myosin head (motor domain) | 94 | 224 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1965 | 1542 | Pfam | Myosin head (motor domain) | 254 | 707 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1965 | 1542 | Pfam | DIL domain | 1360 | 1463 | IPR002710 | - | |
| Lcy3g1965 | 1542 | Gene3D | - | 427 | 611 | - | - | |
| Lcy3g1965 | 1542 | ProSiteProfiles | IQ motif profile. | 841 | 870 | - | - | |
| Lcy3g1965 | 1542 | ProSiteProfiles | Myosin motor domain profile. | 92 | 719 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1965 | 1542 | Gene3D | Kinesin motor domain | 411 | 650 | IPR036961 | - | |
| Lcy3g1965 | 1542 | PANTHER | MYOSIN | 254 | 1481 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lcy3g1965 | 1542 | SMART | iq_5 | 769 | 791 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1965 | 1542 | SMART | iq_5 | 744 | 766 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1965 | 1542 | SMART | iq_5 | 792 | 814 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1965 | 1542 | SMART | iq_5 | 721 | 743 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1965 | 1542 | SMART | iq_5 | 840 | 862 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1965 | 1542 | SMART | iq_5 | 817 | 839 | IPR000048 | GO:0005515(InterPro) | |
| Lcy3g1965 | 1542 | FunFam | Myosin 2 | 300 | 416 | - | - | |
| Lcy3g1965 | 1542 | Coils | Coil | 1002 | 1036 | - | - | |
| Lcy3g1965 | 1542 | PRINTS | Myosin heavy chain signature | 470 | 498 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1965 | 1542 | PRINTS | Myosin heavy chain signature | 122 | 141 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1965 | 1542 | PRINTS | Myosin heavy chain signature | 179 | 204 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1965 | 1542 | PRINTS | Myosin heavy chain signature | 417 | 445 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy3g1965 | 1542 | ProSiteProfiles | IQ motif profile. | 770 | 796 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g1965 | Lcy-Chr3:46777971 | Lcy4g2008 | Lcy-Chr4:46557902 | 0 | dispersed | |
| Lcy3g1965 | Lcy-Chr3:46777971 | Lcy3g1285 | Lcy-Chr3:38810644 | 1.71E-89 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy3g1965 | K10357 | - | csv:101207221 | 2688.29 |