Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1966 ATGGCCGTTGAAACAAACCAAACAAACGAATTCATTTTCCGTTCAAAGCTCCCCGACATTCACATTCCCAATCATCTCCCACTCCACGAATACGTTTTTCAGAACAACGCCAAATTCGGCTCACGCCCATGTTTGATCAACGCCGCCACCGGCCACGTTTACTCATACGACGACGTTCAGTTAACGTCCCGTCGAGTCGCCAGTGGCCTCCACACCCTCGGCATTAAGAAGGGCGACGTCGTCATGAATTTGCTTCCCAACTCGCCGGAGTTCGTCTTCACCTTCCTCGCCGCCTCCTACCGCGGCGCCATCATGACGGCGGCGAACCCGTTTTGCACGGCGGTGGAAATCGCCAAACAGGCCAAAGCCGCCTATGCGAAATTGATCGTCACGATGGCTTGCTTTTCCGATAAGGTCAAGGATTTGGCTGAAGATGGGGTCAAAATCGTGTGTGTTGATTTGGCCGTTGAGGGTTGTTTGCATTTTTCTGTTTTGAGTGGGGCGGATGAATCCCACGCGCCGCCGGTGGAGATCGACGCTGAGGATGTGGTGGCGCTTCCGTACTCCTCCGGCACCACCGGCCTGCCGAAGGGTGTTATGTTGACTCACAAAGGGCTGATCACAAGCGTGGCTCAACAAATCGACGGCCAGAATCCGAACCTGTATTACGACCGCGATGACGTCGTCCTCTGTGTGTTGCCGCTTTTTCATATTTATTCACTGAATTCGATTTTGCTGTGTGGGCTACGCGCCGGCGCTGCGATTTTGATAATGCAGAAATTCGAAATCGTTTCGCTTTTGCACTTGGTTGAGAAATACAAAGTTTCGATCATGCTGATCGTGCCGCCGATTCTTTTGGCGATTGCTAAGTCGCCGGAGTTTGAGAAATACGACGTGTCGTCGGTGAGGATTCTGAAATCCGGAGGTGCGCCGCTGGGGAAGGAGCTGGAGAACGCTGTGAGGGCGAAATTTCCGTCGGCGGTTCTCGGGCAGGGGTACGGAATGACCGAGGCCGGTCCGGTTCTGACCATGAGTTTGGCTTTTGCGAAGGAACCGTTTCCAGTGAAAGCCGGAAGCTGTGGGACGGTGGTGAGAAATGCTGAAATGAAGGTTGTTGACCCGGAAACCGGCGCGTCGTTGCCGGCGAATTCCACCGGAGAGATTTGTATCAGAGGGGATCAGATCATGAAGGGGTATTTGAATGATTTGGAGTCAACGAAGAGTACTATTGATAAAGAAGGATGGCTTCATACCGGCGATATCGGTTTCGTCGACGACGATGACGAGCTTTTCATTGTGGATCGGCTGAAGGAACTGATCAAATTCAAGGCATTTCAGGTGGCGCCGGCGGAGCTGGAGGCCCTTCTTATCACTCACCCAAAACTTTCCGATGCTGCAGTTATTGGTAAGGCAGACGAGCAAGCCGGAGAAGTGCCGGTGGCGTTTGTAGTGAAGGCAGAGGGCGACGCAATCGCTGAAGAAGATGTAAAGCAATTCATATCAAAACAAGTGGTATTCTATAAAAGACTAAACCGAGTGTTTTTTGTCAATACCATTCCAAAAGCACCATCTGGCAAAATCCTTAGAAAAGAGCTAAGAGCAAAATTGGCTTCTGGTGCTTACCATTAG 1629 51.44 MAVETNQTNEFIFRSKLPDIHIPNHLPLHEYVFQNNAKFGSRPCLINAATGHVYSYDDVQLTSRRVASGLHTLGIKKGDVVMNLLPNSPEFVFTFLAASYRGAIMTAANPFCTAVEIAKQAKAAYAKLIVTMACFSDKVKDLAEDGVKIVCVDLAVEGCLHFSVLSGADESHAPPVEIDAEDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQIDGQNPNLYYDRDDVVLCVLPLFHIYSLNSILLCGLRAGAAILIMQKFEIVSLLHLVEKYKVSIMLIVPPILLAIAKSPEFEKYDVSSVRILKSGGAPLGKELENAVRAKFPSAVLGQGYGMTEAGPVLTMSLAFAKEPFPVKAGSCGTVVRNAEMKVVDPETGASLPANSTGEICIRGDQIMKGYLNDLESTKSTIDKEGWLHTGDIGFVDDDDELFIVDRLKELIKFKAFQVAPAELEALLITHPKLSDAAVIGKADEQAGEVPVAFVVKAEGDAIAEEDVKQFISKQVVFYKRLNRVFFVNTIPKAPSGKILRKELRAKLASGAYH 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46803093 46805312 - Maker00014265 Lcy3g1966 629158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1966 542 CDD 4CL 22 532 - -
Lcy3g1966 542 SUPERFAMILY Acetyl-CoA synthetase-like 10 538 - -
Lcy3g1966 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Lcy3g1966 542 Pfam AMP-binding enzyme 34 400 IPR000873 -
Lcy3g1966 542 Gene3D - 437 538 IPR045851 -
Lcy3g1966 542 Gene3D - 3 436 IPR042099 -
Lcy3g1966 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Lcy3g1966 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
Lcy3g1966 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 437 - -
Lcy3g1966 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0119 Lcy-Chr1:1021362 Lcy3g1966 Lcy-Chr3:46803093 2.18E-26 dispersed
Lcy3g1966 Lcy-Chr3:46803093 Lcy3g1968 Lcy-Chr3:46826853 0 dispersed
Lcy3g1966 Lcy-Chr3:46803093 Lcy3g1967 Lcy-Chr3:46817260 0 tandem
Lcy12g0501 Lcy-Chr12:6031207 Lcy3g1966 Lcy-Chr3:46803093 2.23E-287 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1966 K01904 - csv:101218361 938.332