Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1968 ATGGCCGTTGAGACAAACCAAACAAACGAATTCATTTTCCGCTCCAAGCTCCCCGATATTCACATTCCCAATCATCTCCCTCTTCACGAATACGTCTTTCAGACCAACGCCAAATTCGGCTCACGCCCATGTTTGATCAACGGCGCCACCGGCCACGTCTACTCGTACGACGACGTTCAGTTAACGTCCCGTCGAGTCGCCACTGGCCTCCACACCCTCGGCATTAAGAAGGGCGACGTCATCATGAATTTGCTTCCCAACTCGCCGGAGTTCGTCTTCACATTCCTCGCCGCCTCCTACCGCGGCGCCATCATGACGGCCGCCAACCCGTTTTACACGCCGGTGGAAATCGCCAAACAGGCCAAAGCCGCCAATGTCAAATTGATCGTCACGATGGCTTGCTTTTACGATCGGGTTAAGGATTTGGCCGAAAATGGGGTGAAAATCGTGTGCGTTGATTTTGCCGTTGAGGGTTGTCTGCATTTCTCTGTTTTGAGTGGGGCGGATGAATCTCACGCGCCGCCGGTGGATTTCGCCGCCGATGATGTGGTGGCGCTGCCCTACTCCTCCGGCACCACTGGTTTGCCGAAGGGTGTTATGTTGACTCACAAAGGGCTGATCACAAGCGTGGCTCAACAAATCGACGGCCACAATCCGAACCTGTATTACCACGGCGATGACGTCCTCCTCTGTGTTTTGCCGTTTTTTCATATTTATTCACTGAATTCGATTTTGCTGTGTGGGCTACGCGCCGGCGCTGCGATTTTGATAATGCAGAAATTCGAGATCGTTTCGCTTTTGCAATTGGTTGAGAAATACAGAGTTTCGGTCATGCCGATTGTGCCGCCGATTTTTTTGGCAATCGCTAAGTCGCCGGAGTTTGAGAAATATGATGTGTCGTCGGTGAGAATTTTGAAATCCGGCGGAGCGCCGCTGGGGAAGGAGCTGGAGGACGCCGTGAGGGCGAAATTTCCGGCGGCGGTTCTCGGGCAGGGGTACGGAATGACCGAGGCCGGTCCGGTTCTGGCGATGAGTTTGGCTTTTGCGAAAGAACCGTTTCCAGTGAAAGCCGGAGCGTGTGGGACGGTGGTGAGAAATGCTGAGATGAAGATTGTTGACCCGGAAACGGGCGCCTCGTTGCCGGCGAATTCGGCCGGAGAGATTTGTATCAGAGGGGATCAGATCATGAAAGGGTATTTGAATGATTCGGAATCCACGAAGAGGACTGTTGATAAAGAAGGATGGCTTCATACCGGCGATATCGGTTTCATCGACGAGGACGACGAGCTGTTCATCGTTGATCGGCTGAAGGAACTGATAAAATTCAAGGCGTTTCAAGTGGCGCCGGCAGAGCTGGAGGCCCTTCTATTAACTCACCCCAAACTGTCTGATGCCGCTGTTATTGGTATGGCGGATGAGCAGGCTGGAGAAGTGCCAGTAGCGTTTGTAGTGAAGGCGAACGGCGGGACAATCACAGAAGAAGATGTAAAGCAATTCATATCAAAACAAGTGGTGTTCTACAAGAGACTAAAACGAGTGTTTTTCGTCAATGCTATTCCAAAGGCACCATCGGGCAAAATTCTAAGAAAAGAACTTAGAGCTAAATTAGCTTCCGGTGCTTATAATTAA 1629 51.44 MAVETNQTNEFIFRSKLPDIHIPNHLPLHEYVFQTNAKFGSRPCLINGATGHVYSYDDVQLTSRRVATGLHTLGIKKGDVIMNLLPNSPEFVFTFLAASYRGAIMTAANPFYTPVEIAKQAKAANVKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHFSVLSGADESHAPPVDFAADDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQIDGHNPNLYYHGDDVLLCVLPFFHIYSLNSILLCGLRAGAAILIMQKFEIVSLLQLVEKYRVSVMPIVPPIFLAIAKSPEFEKYDVSSVRILKSGGAPLGKELEDAVRAKFPAAVLGQGYGMTEAGPVLAMSLAFAKEPFPVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDSESTKRTVDKEGWLHTGDIGFIDEDDELFIVDRLKELIKFKAFQVAPAELEALLLTHPKLSDAAVIGMADEQAGEVPVAFVVKANGGTITEEDVKQFISKQVVFYKRLKRVFFVNAIPKAPSGKILRKELRAKLASGAYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46826853 46828853 - Maker00013802 Lcy3g1968 629160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1968 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
Lcy3g1968 542 CDD 4CL 22 532 - -
Lcy3g1968 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Lcy3g1968 542 Gene3D - 437 538 IPR045851 -
Lcy3g1968 542 Gene3D - 5 436 IPR042099 -
Lcy3g1968 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 437 - -
Lcy3g1968 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Lcy3g1968 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Lcy3g1968 542 SUPERFAMILY Acetyl-CoA synthetase-like 10 538 - -
Lcy3g1968 542 Pfam AMP-binding enzyme 34 400 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0501 Lcy-Chr12:6031207 Lcy3g1968 Lcy-Chr3:46826853 5.79E-290 dispersed
Lcy3g1966 Lcy-Chr3:46803093 Lcy3g1968 Lcy-Chr3:46826853 0 dispersed
Lcy3g1968 Lcy-Chr3:46826853 Lcy4g1684 Lcy-Chr4:42518512 2.08E-237 dispersed
Lcy3g1967 Lcy-Chr3:46817260 Lcy3g1968 Lcy-Chr3:46826853 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1968 K01904 - csv:101218121 980.319