Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1979 ATGGCGAAGATCTCACATCCACCGCACAAGAATTCCATTTCCTCCACTTCTGATCCTCACTCCTCTCCAATCCATCAGAGGAAGCCTCTCAAGCGCACGCGTAAGTCCGTTCCTCGAGATGCTCCCGCTCAGCGCAGCTCTGTATACCGCGGAGTCACCAGGCATAGATGGACTGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAACGAAGGACAGAATAAGAAAGGAAGACAAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTAGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTTAACTTTCCACTATTAACGTACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCAAAATATAGAGGTGTAGCAAGGATTCTGAGCACCATCACAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATATCTTTACCTTGGAACATACGGTAATTTTCTTCTCAAACCCGACTGTAAACTCTACCCAAGAAGAAGCTGCCACGGCTTACGACATGGCGGCCATAGAATACCGTGGCCTTAACGCCGTTACGAATTTCGATCTCAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACGGAACATTCCAAACAATGACCGTCCACCAAGCCCCAACGCCGGCGAAACTACCTCAGAATTTGACCCCAAATCCCCCCTCGGATTCACCTGTCCATCGCAATGTTCGAACTCCGGCCAACCCGCCACCGCTCCACTGCCGGAACCTGGCGGCGAAGACTCCTCGTCGTCGTCGGCGGCGCTGGAGCTGCTACTCCGTTCGTCAAAATTCAAAGACATACTAGAAAGGACATCCACCGCCGAGGCTCCACAGACACCACCGGAATCCGACCGGCCGCGCCGATGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCCCCAAGATTCCGGCGACATTGCCGGAAGCGACGACGGCCTTTTCGGGTACCTAAATTCGTTTTTTCCTTCATCAGTTTTTCACTGCGAACTCGATGCTTAA 1113 50.85 MAKISHPPHKNSISSTSDPHSSPIHQRKPLKRTRKSVPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQGAYDDEEAAAHAYDLAALKYWGTETVLNFPLLTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARILSTITMEDGKLESAECLATNIFTLEHTVIFFSNPTVNSTQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKCLRPGERNIPNNDRPPSPNAGETTSEFDPKSPLGFTCPSQCSNSGQPATAPLPEPGGEDSSSSSAALELLLRSSKFKDILERTSTAEAPQTPPESDRPRRCIPDDIQTYFDCTPQDSGDIAGSDDGLFGYLNSFFPSSVFHCELDA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46921561 46926659 + Maker00014863 Lcy3g1979 629171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1979 370 Gene3D AP2/ERF domain 191 220 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1979 370 Gene3D AP2/ERF domain 48 113 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1979 370 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 34 238 - -
Lcy3g1979 370 SMART rav1_2 48 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1979 370 SMART rav1_2 147 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1979 370 MobiDBLite consensus disorder prediction 228 288 - -
Lcy3g1979 370 MobiDBLite consensus disorder prediction 8 23 - -
Lcy3g1979 370 MobiDBLite consensus disorder prediction 305 325 - -
Lcy3g1979 370 MobiDBLite consensus disorder prediction 236 273 - -
Lcy3g1979 370 MobiDBLite consensus disorder prediction 1 49 - -
Lcy3g1979 370 SUPERFAMILY DNA-binding domain 192 220 IPR016177 GO:0003677(InterPro)
Lcy3g1979 370 SUPERFAMILY DNA-binding domain 47 112 IPR016177 GO:0003677(InterPro)
Lcy3g1979 370 ProSiteProfiles AP2/ERF domain profile. 48 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1979 370 PRINTS Ethylene responsive element binding protein signature 93 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1979 370 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g1979 370 FunFam AP2-like ethylene-responsive transcription factor 47 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0205 Lcy-Chr2:1611567 Lcy3g1979 Lcy-Chr3:46921561 3.91E-82 dispersed
Lcy3g1979 Lcy-Chr3:46921561 Lcy7g0538 Lcy-Chr7:4770610 2.12E-66 dispersed
Lcy3g1979 Lcy-Chr3:46921561 Lcy10g0392 Lcy-Chr10:8243982 1.32E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19888 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1979 K09285 - csv:101206499 519.235