Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1980 ATGATCGGCGACAAGAAAACGATCATACTTCGCCAAGCTTCCTATAATTCTCTGTACGTGAATCCCCTCAACGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGGCGGCTGGCCGGCGGCGGCGACGCCCTCGACGGTGGATTCCGGCAAGGTAAAGAAAACTTGACGCCCAATACGAAGGATAAACAGAGCGATGAAAATGGAGTGTTATGCGACAAAGAAAATGCGATTCCCAATAATGGGTCTTGTGCGAATCCGAAGAAATTTGGAGATTTGAAGTCATTTTCGAGTGGGAAGGCTTTGAAGCCTTCGTCTCTTCATCTCTGTATGCAGATGAATGAGCCCGATAAGGTTTTTGCCTCTAGATTATGGGATGGTACTGACTCGGAACATTCGAGTTCGTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCTACATTGCCAAACAGGTCGTTGTTGTGTAGGCCATTGCCTGTGGATGTCGGGAGATGTACATGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTTCATGGTGGTGCTTTCTATTCTCTATACACTAATGAAGGGAAGGGACGGCAGGATCGGAAGTTGGCAGTGGCTCGCCATGGACGACGAAATGGGAGGTCGGAGTATAAGATAGCTCAGAGTGCAAGAGGGATATTGTACAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCAAAGTATCATATATGGGATCAGGGGAGCCGTCTGAAATCGATCCCAAGCCAGTCGAAATCGCTTCTGGCTGCTGTAACGTTCATGCCTACAATAACCACTTGGACAGGCAGTCATAGAAGCATGAAGGCTTTCATTCCCAAGCATCAATCAATGCAGCTGAAGAACACCAATCAGGTGCAACACATAGCAGGGCTGCCGAGGGAGTGGGAGGAAGAAAAGGCCAAAGTCCACCAGCTTGTTTCTAGAGTTCCCCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTCAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAATCCTCTGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGCAAGCAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTACAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGCCTGGCTTCCATAGATTCAAAGCTTTGTTGCTCAGTTTGA 1251 46.52 MIGDKKTIILRQASYNSLYVNPLNDLRHNRSCSDGGRLAGGGDALDGGFRQGKENLTPNTKDKQSDENGVLCDKENAIPNNGSCANPKKFGDLKSFSSGKALKPSSLHLCMQMNEPDKVFASRLWDGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHGRRNGRSEYKIAQSARGILYNADDSFVGSMTTNLVGSKYHIWDQGSRLKSIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQSMQLKNTNQVQHIAGLPREWEEEKAKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQSSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46927921 46931115 - Maker00014450 Lcy3g1980 629172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1980 416 Gene3D Tubby Protein; Chain A 154 415 IPR025659 -
Lcy3g1980 416 MobiDBLite consensus disorder prediction 43 67 - -
Lcy3g1980 416 PANTHER TUBBY-RELATED 134 414 - -
Lcy3g1980 416 Pfam Tub family 161 410 IPR000007 -
Lcy3g1980 416 SUPERFAMILY Tubby C-terminal domain-like 149 414 IPR025659 -
Lcy3g1980 416 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Lcy3g1980 416 PRINTS Tubby superfamily signature 352 368 IPR000007 -
Lcy3g1980 416 PRINTS Tubby superfamily signature 237 261 IPR000007 -
Lcy3g1980 416 PRINTS Tubby superfamily signature 393 415 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1980 Lcy-Chr3:46927921 Lcy6g0535 Lcy-Chr6:5008947 9.37E-11 dispersed
Lcy3g1980 Lcy-Chr3:46927921 Lcy11g1455 Lcy-Chr11:38444903 8.62E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19889 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1980 K19600 - csv:101216780 757.288