Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1987 ATGGCGCCGGACCCCGAGGATGAGATCAAGGACGAGAAGAATCCTCGCCCTCTCGACGAGGACGATATAGCTCTTCTCAAAACCTATGGGTTGGGACCTTATTCAACCTATATTAAGAAGGTAGAGAAAGAAATCAAGGATATGGCAAAGAAGGTCAATGATTTATGTGGAATTAAGGAGTCTGATACCGGTTTAGCAGCTCCTAGCCAGTGGGATCTTGTCTCTGATAAGCAAATGATGCAGGAAGAGCAGCCTCTTCAGGTGGCGAGATGCACGAAGATCATCAATCCAAATTCTGAAGATGCCAAATATGTTATTAATGTTAAGCAAATTGCAAAGTTTGTTGTTGGACTTGGTGACAAGGTTTCCCCAACAGACATAGAAGAAGGCATGCGTGTAGGGTACGTTTTGGATATTCTCTACAAATTTTTCTCATTGTCTTGCATTGATTCAGTTCTAAGAGTGTCCAATGTTGATAGGAATAAATATCAGATTCAAATTCCTTTGCCTCCTAAAATTGACCCAAGCGTGACAATGATGACGGTTGAAGAAAAACCTGATGTGACATACAATGATGTTGGTGGATGTAAGGAGCAGATTGAGAAGATGCGAGAGGTTGTTGAGTTACCTATGCTTCACCCCGAGAAATTTGTAAAGCTTGGAATCGATCCTCCAAAGGGAGTTCTTTGCTATGGTCCCCCTGGAACAGGCAAAACACTTCTAGCACGAGCTGTAGCTAACAGAACAGATGCTTGCTTTATTCGTGTTATTGGGAGTGAACTTGTTCAAAAATATGTTGGTGAGGGAGCTCGGATGGTCAGAGAACTATTTCAGATGGCACGATCCAAAAAGGCTTGCATAGTGTTTTTCGATGAAGTAGATGCCATAGGAGGTGCTCGCTTTGATGATGGTGTTGGTGGTGACAATGAGGTTCAACGTACAATGCTTGAAATTGTGAATCAACTTGATGGCTTTGATGCACGTGGAAACATCAAAGTTCTGATGGCAACAAATAGGCAAGTCATTTTATTAGTGGCTGCATTAACTAATTTTCATCTCTCTTTCAGGCCTGATACACTTGATCCAGCTCTGTTACGACCTGGAAGGCTGGATCGGAAGGTTGAATTTGGGCTTCCTGATTTGGAGAGTAGGACACAGATCTTTAAAATCCATACAAGGACCATGAATTGTGAGAGGGACATCCGGTTTGAACTCTTGGCTAGGCTTTGCCCTAACTCTACAGGAGCCGATATCAGGAGTGTCTGCACGGAAGCTGGAATGTATGCGATCCGAGCTCGAAGAAAGACTGTGACGGAGAAGGACTTCCTTGATGCAGTGAACAAGGTGATCAAGGGATATCAAAAGTTCAGTGCAACCCCAAAGTATATGAACCCTTTGTTCCTTTCATTCTACATTTCCGATCCCGATTTCTTCATCAATTTCCATTTTCAACATCTTCCAGTTCTAGTCAAGCTTTCATCAATGGCTTCCAAGAGCGAAGGCAAAGGCATTGGCATTGATCTCGGCACCACTTACAGCTGCGTCGGCGTTTGGCAAAACGATAGGGTTGAGATTATTGCCAACGACCAAGGCAACAGAACTACGCCCTCCTATGTGGCTTTCACCGATACCGAACGGCTTATCGGCGATGCGGCCAAGAATCAGGTCGCGATGAATCCTCAGAACACCGTTTTTGACGCCAAGCGGCTCATCGGCCGCCGATTCTCCGACTCTTCCGTTCAGAGCGATATGAAGCTTTGGCCATTCAAGGTCGTTGCAGGTCCTGGAGACAAGCCGATGATCGTCGTCAACTACAAAGGCGAAGAGAAACAATTCGCGCCAGAGGAGATTTCGTCAATGGTGCTGATCAAGATGAAGGAAATCGCCGAGGCTTACTTAGGGCATAATGTAAAGAACGCTGTGATTACAGTCCCCGCCTATTTCAACGATTCACAGCGGCAGGCCACCAAGGACGCCGGAGCAATCGCTGGCCTAAACGTACTGAGAATCATCAACGAGCCAACTGCCGCCGCCATTGCTTACGGTCTGGACAAGAAAGCCTCCCGCTCCGGCGAGAAGAACGTTCTGATCTTCGATCTCGGCGGCGGAACGTTCGACGTTTCGCTGTTGACGATCGAGGAAGGAATCTTCGAAGTGAAAGCCACCGCCGGAGACACTCATCTCGGCGGCGAGGATTTCGATAACCGCCTCGTGAACCACTTCGCGGCGGAGTTCAAAAGGAAGCACAAGAAGGACATCGGCGGCAATGCCAGAGCTCTCCGTCGGCTGAGAACGGCCTGCGAAAGGGCGAAACGGACTCTATCTTCGACAACACAAACTACGATCGAAATCGATTCTTTGTACGAAGGAATTGACTTCTACGCCACGATTACCAGGGCGAGATTCGAGGAACTGAACATGGATTTGTTCAGAAGGTGTATGGAACCAGTGGAGAAATGTCTGCGAGATTCCAAAATTGACAAGGGGCAAATACACGACGTCGTTTTGGTTGGCGGTTCCACAAGAATCCCTAAAGTTCAGCAGCTATTGCAAGATTTCTTCAACGGAAAAGAGCTCTGCAAGAGCATAAACCCTGACGAAGCCGTCGCGTATGGCGCCGCCGTCCAGGCGGCGATTCTGTGCGGCGAAGGCAACGAGAAGGTCCAAGATCTACTTCTTCTCGACGTCACACCTCTAAGTCTTGGAATCGAAACCGCCGGCGGAGTAATGACGGTGTTAATTCCAAGAAACACGACGATTCCGACGAAGAAGGAGCAAGTTTTCTCGACTTATTCGGACAATCAAACGAGCGTTCTAATCCAAGTTTATGAAGGGGAAAGAGCAAGAACAAAAGACAATAACCTTCTAGGAACATTTGAGCTCAAGGGGATTCCACCGGCGCCGAGAGGAGTGCCGCAAATCAACGTCTGTTTCGACATCGACGCCAATGGGATTCTGAACGTCACGGCGGAGGACAAGACGGCCGGAGTTAAGAACACGATCACCATTACCAACGACAAGGGGAGATTGAGCAGAGATGAGATTGAGAGGATGGTGCAGGAGGCGGAGAAGTACAAGGCGGAGGATGAACAGGTAAAGAAGAAGGTTGAGGCGAAGAACGCCTTGGAGAATTATGCTTATAACATGAGGAACACCGTGAGGGATGAGAAATTGGCCGGAAAGATGAATCCGGCGGAGAAGGGGAAGATAGAGAAGGCGATTGATGAGGCAATTGATTGGCTGGAGAGGAACCAGTTGGCTGAAGTGGATGAATTTGAGGACAAGCTCAAGGAACTAGAGGGGCTTTGTAATCCTATCATTGCTAAGCTTTATCAGGGTGGTGCTGGTGGAGATATGCCGATGGGTAACGGCGGTGGTGCCGGCTGCAGCGGCGGCGCTGGAGCTGGGCCAAAGATTGAAGAGGTCGATTGA 3432 47.99 MAPDPEDEIKDEKNPRPLDEDDIALLKTYGLGPYSTYIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGYVLDILYKFFSLSCIDSVLRVSNVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRQVILLVAALTNFHLSFRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMNPLFLSFYISDPDFFINFHFQHLPVLVKLSSMASKSEGKGIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDSSVQSDMKLWPFKVVAGPGDKPMIVVNYKGEEKQFAPEEISSMVLIKMKEIAEAYLGHNVKNAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKASRSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFAAEFKRKHKKDIGGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRRCMEPVEKCLRDSKIDKGQIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILCGEGNEKVQDLLLLDVTPLSLGIETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINVCFDIDANGILNVTAEDKTAGVKNTITITNDKGRLSRDEIERMVQEAEKYKAEDEQVKKKVEAKNALENYAYNMRNTVRDEKLAGKMNPAEKGKIEKAIDEAIDWLERNQLAEVDEFEDKLKELEGLCNPIIAKLYQGGAGGDMPMGNGGGAGCSGGAGAGPKIEEVD 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46979478 46987417 + Maker00014105 Lcy3g1987 629179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1987 1143 Pfam ATPase family associated with various cellular activities (AAA) 228 378 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy3g1987 1143 FunFam Heat shock protein 70 1040 1113 - -
Lcy3g1987 1143 FunFam 26S protease regulatory subunit 7 181 377 - -
Lcy3g1987 1143 ProSitePatterns Heat shock hsp70 proteins family signature 1. 506 513 IPR018181 -
Lcy3g1987 1143 FunFam Heat shock 70 kDa 729 812 - -
Lcy3g1987 1143 Gene3D - 181 377 IPR027417 -
Lcy3g1987 1143 Gene3D - 686 860 - -
Lcy3g1987 1143 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 886 1043 IPR029047 -
Lcy3g1987 1143 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 1037 1118 IPR029048 -
Lcy3g1987 1143 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 885 1038 IPR029047 -
Lcy3g1987 1143 Gene3D Actin; Chain A, domain 4 729 812 - -
Lcy3g1987 1143 Pfam 26S proteasome regulatory subunit 7, OB domain 79 136 IPR048723 -
Lcy3g1987 1143 PRINTS 70kDa heat shock protein signature 552 560 - -
Lcy3g1987 1143 PRINTS 70kDa heat shock protein signature 703 713 - -
Lcy3g1987 1143 PRINTS 70kDa heat shock protein signature 971 987 - -
Lcy3g1987 1143 PRINTS 70kDa heat shock protein signature 530 542 - -
Lcy3g1987 1143 PRINTS 70kDa heat shock protein signature 640 660 - -
Lcy3g1987 1143 PRINTS 70kDa heat shock protein signature 831 847 - -
Lcy3g1987 1143 PRINTS 70kDa heat shock protein signature 502 515 - -
Lcy3g1987 1143 PRINTS 70kDa heat shock protein signature 863 883 - -
Lcy3g1987 1143 PRINTS 70kDa heat shock protein signature 890 909 - -
Lcy3g1987 1143 PANTHER HEAT SHOCK PROTEIN 70KDA 504 1076 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Lcy3g1987 1143 CDD HSPA1-2_6-8-like_NBD 504 880 - -
Lcy3g1987 1143 FunFam Heat shock cognate 70 kDa protein 2 813 860 - -
Lcy3g1987 1143 FunFam Heat shock protein 70 504 691 - -
Lcy3g1987 1143 Gene3D - 152 180 IPR012340 -
Lcy3g1987 1143 Gene3D - 34 138 IPR012340 -
Lcy3g1987 1143 FunFam Heat shock 70 kDa protein 565 620 - -
Lcy3g1987 1143 ProSitePatterns Heat shock hsp70 proteins family signature 2. 697 710 IPR018181 -
Lcy3g1987 1143 FunFam Heat shock 70 kDa 885 1039 - -
Lcy3g1987 1143 SUPERFAMILY Actin-like ATPase domain 691 881 IPR043129 -
Lcy3g1987 1143 SUPERFAMILY Actin-like ATPase domain 504 685 IPR043129 -
Lcy3g1987 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 458 IPR027417 -
Lcy3g1987 1143 CDD RecA-like_PAN_like 189 376 - -
Lcy3g1987 1143 Gene3D - 565 620 - -
Lcy3g1987 1143 FunFam Heat shock 70 kDa protein 692 761 - -
Lcy3g1987 1143 Pfam Hsp70 protein 504 1112 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Lcy3g1987 1143 SMART AAA_5 224 380 IPR003593 GO:0016887(InterPro)
Lcy3g1987 1143 Gene3D - 379 461 - -
Lcy3g1987 1143 Coils Coil 1082 1102 - -
Lcy3g1987 1143 Gene3D - 1039 1113 IPR029048 -
Lcy3g1987 1143 Gene3D - 504 878 - -
Lcy3g1987 1143 Coils Coil 1015 1039 - -
Lcy3g1987 1143 ProSitePatterns Heat shock hsp70 proteins family signature 3. 834 848 IPR018181 -
Lcy3g1987 1143 FunFam 26S protease regulatory subunit 7 379 450 - -
Lcy3g1987 1143 Pfam AAA+ lid domain 400 443 IPR041569 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1539 Lcy-Chr11:39263235 Lcy3g1987 Lcy-Chr3:46979478 1.19E-79 dispersed
Lcy2g0193 Lcy-Chr2:1510056 Lcy3g1987 Lcy-Chr3:46979478 0 dispersed
Lcy3g1987 Lcy-Chr3:46979478 Lcy6g0409 Lcy-Chr6:3876802 1.02E-171 dispersed
Lcy3g1987 Lcy-Chr3:46979478 Lcy2g0770 Lcy-Chr2:6840108 7.82E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1987 K03283 - cit:102619093 1135.55