Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g1989 ATGGGGATATATCTTAGCTCCCCTAAAACAGAAAAGGCCTCGGATGATGGTGAAAACGAAAGACTTCGGTATGGCCTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTGTCTAGATTTGGACACATCAACGTCATTCTTTGGCGTTTATGATGGCCATGGAGGTAAAGCAGTTTCTAAGTTCTGTGCCAAGTATCTTCACCAACAGGTGCTCAAGCATGAATCATATATGGCTGGAGATTTGGGAACTTCAGTACAGAAAGCCTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTGGGAGACAAAATGGACAAGCTTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGGGTAATGAAGCTAACAACCAAGTAGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCAATCATACGAAATAACCAACTTGTGGTGGCAAATGCTGGTGATTCCCGCTGTGTCATTTCCAGAAAGGGCCAGGCATATAATCTGTCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCTGGTGGTTTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCTCGGGCTATAGGAGACATGGAGTTTAAGCAGAATAAAAGTATGCCCGCAGAAAAGCAGATTGTAACTGCCAACCCAGATGTAACAACTGTTGAGCTTTGTGAGGATGACGAGTTTCTTGTTATTGCCTGTGATGGGATCTGGGATTGCATGTCCAGCCAACAACTGGTTGACTACATTAGAGATCAGCTTAAAACGGAAAGTAAACTATCAGTTATTTGTGAGAAAGTATTTGACAGATGCTTGGCACCCTCAGCTGGTGGTGAAGGATGTGACAACATGACTATGATTTTGGTTCAGTTTAAGAAACCATTTATCCCATATGCTGCTTCTGCTGAGGAGCTGCCTTCATCGTCCAATCAACCGTCGTCTGATTCAAATGAAGGCTCTTCTAAGACTGAATAG 1086 44.48 MGIYLSSPKTEKASDDGENERLRYGLSSMQGWRATMEDAHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHQQVLKHESYMAGDLGTSVQKAFLRMDEMMRGQRGWRELAILGDKMDKLSGMIEGFIWSPKGNEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIRDQLKTESKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKKPFIPYAASAEELPSSSNQPSSDSNEGSSKTE 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47041257 47047143 + Maker00014232 Lcy3g1989 629181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g1989 361 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Lcy3g1989 361 Pfam Protein phosphatase 2C 157 313 IPR001932 -
Lcy3g1989 361 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Lcy3g1989 361 SUPERFAMILY PP2C-like 3 329 IPR036457 -
Lcy3g1989 361 SMART PP2C_SIG_2 28 328 IPR001932 -
Lcy3g1989 361 CDD PP2Cc 23 328 IPR001932 -
Lcy3g1989 361 PANTHER PROTEIN PHOSPHATASE 2C 19 329 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lcy3g1989 361 Gene3D - 1 329 IPR036457 -
Lcy3g1989 361 SMART PP2C_4 13 326 IPR001932 -
Lcy3g1989 361 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169(InterPro)
Lcy3g1989 361 MobiDBLite consensus disorder prediction 339 361 - -
Lcy3g1989 361 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1989 Lcy-Chr3:47041257 Lcy9g1902 Lcy-Chr9:44049366 4.13E-207 dispersed
Lcy3g1989 Lcy-Chr3:47041257 Lcy12g0891 Lcy-Chr12:12724307 1.73E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g1989 K17499 - csv:101214132 686.797