Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy3g1996 | ATGCCGTTCGACGGTTCTTCAGCCTCCGCCCCCACCGTCTGCGTCACCGGCGCCGGCGGCTTCATTGCCTCATGGATCGTCAAACTCCTCCTCGAGAAAGGCTATACCGTAAGAGGAACCGTCAGAAATCCAGACGATCCGAAGAACGGCCATCTGAGAGAGCTCGAAGGCGCGGCGGAACGGCTCAGTTTGCATAAAGCTGATCTTCTCGATTTCGAGAGCCTCAAAGCGGCGATCAATGGCTGCGATGGCGTCTTCCACACGGCATCGCCTGTGACTGACGATCCGGTGATTTGCTCTTCACATTTTCTCGAGCAAATGGTGGAACCGGCGGTCAACGGCACGAAGAACGTTATAATCGCGGCGGCCGAAGCCAATGTCCGCCGCGTCGTGTTCACTTCCTCGATTGGCGCAGTCTACATGGACCCCAACCGTGGTCCAGACGAGATCGTGGACGAGTCCTGTTGGAGCGATCTCGAGTTCTGCAAGAATACCAAGAACTGGTACTGCTACGGTAAAGCTGTGGCGGAGCAGGCGGCGTGGGAGGTTGCGAAGGAGAAGGGTGTGGACTTGGTGGTGGTGAATCCGGTGCTGGTGCTAGGGCCATTGCTGCAATCCACCATTAATGCGAGCATAATTCATATACTGAAATACTTGACTGGATCGGCGAAGACGTACGCCAATTCGGTTCAGGCGTATGTGCACGTGAAGGATGTGGCTCTAGCACATATTCTCGTGTACGAGAATCCCTCCGCCGCCGGCCGCTACCTCTGCGCCGAGAGTGTGCTCCACCGAGGAGAGATCGTTGAGATTCTGGCCAAGTTGTTCCCCGAATATCCTATTCCCACCAAGTGCTCAGATGAAGTGAACCCAAGGAAGAAGGCATACAACTTCTCCAACCAGAAGCTGAAGGACTTGGGATTGGAGTTCACACCAGTGAAGCAGTGTCTATACGACACCGTAAAGAGCCTGCAAGAGAAAGGTCATCTCCCAATTCCCACTTGTACTCAACCAGCAGAGTCCATTCGAATTCAATCTTAA | 1041 | 54.27 | MPFDGSSASAPTVCVTGAGGFIASWIVKLLLEKGYTVRGTVRNPDDPKNGHLRELEGAAERLSLHKADLLDFESLKAAINGCDGVFHTASPVTDDPVICSSHFLEQMVEPAVNGTKNVIIAAAEANVRRVVFTSSIGAVYMDPNRGPDEIVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWEVAKEKGVDLVVVNPVLVLGPLLQSTINASIIHILKYLTGSAKTYANSVQAYVHVKDVALAHILVYENPSAAGRYLCAESVLHRGEIVEILAKLFPEYPIPTKCSDEVNPRKKAYNFSNQKLKDLGLEFTPVKQCLYDTVKSLQEKGHLPIPTCTQPAESIRIQS | 346 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 47089779 | 47094538 | - | Maker00015164 | Lcy3g1996 | 629188 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy3g1996 | 346 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 12 | 323 | IPR050425 | GO:0016616(PANTHER) | |
| Lcy3g1996 | 346 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 11 | 325 | IPR036291 | - | |
| Lcy3g1996 | 346 | CDD | FR_SDR_e | 13 | 308 | - | - | |
| Lcy3g1996 | 346 | Gene3D | - | 4 | 345 | - | - | |
| Lcy3g1996 | 346 | FunFam | Cinnamoyl-CoA reductase 1 | 4 | 343 | - | - | |
| Lcy3g1996 | 346 | Pfam | NAD dependent epimerase/dehydratase family | 13 | 253 | IPR001509 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g0205 | Lcy-Chr10:3030433 | Lcy3g1996 | Lcy-Chr3:47089779 | 1.84E-32 | dispersed | |
| Lcy11g0059 | Lcy-Chr11:580076 | Lcy3g1996 | Lcy-Chr3:47089779 | 1.35E-91 | dispersed | |
| Lcy12g0525 | Lcy-Chr12:6410857 | Lcy3g1996 | Lcy-Chr3:47089779 | 2.91E-188 | dispersed | |
| Lcy12g0526 | Lcy-Chr12:6419558 | Lcy3g1996 | Lcy-Chr3:47089779 | 6.58E-185 | dispersed | |
| Lcy12g0527 | Lcy-Chr12:6431949 | Lcy3g1996 | Lcy-Chr3:47089779 | 1.53E-154 | dispersed | |
| Lcy3g1996 | Lcy-Chr3:47089779 | Lcy8g1326 | Lcy-Chr8:40017218 | 1.79E-71 | dispersed | |
| Lcy7g0465 | Lcy-Chr7:4103402 | Lcy3g1996 | Lcy-Chr3:47089779 | 7.80E-83 | transposed | |
| Lcy8g2086 | Lcy-Chr8:47054401 | Lcy3g1996 | Lcy-Chr3:47089779 | 1.92E-96 | transposed | |
| Lcy9g2361 | Lcy-Chr9:47874468 | Lcy3g1996 | Lcy-Chr3:47089779 | 7.22E-95 | transposed | |
| Lcy12g0524 | Lcy-Chr12:6400152 | Lcy3g1996 | Lcy-Chr3:47089779 | 2.77E-186 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy3g1996 | K09753 | - | csv:101213412 | 614.379 |