Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2003 ATGGCCCGACCTCAGCAACGCTATCGCGGTGTTCGCCAACGTCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACAAGAATATGGTTAGGGACGTTCGAGACGGCGGAGGACGCAGCCCGAGCCTACGACGAGGCGGCACGGCTGATGTGCGGACGGAAAGCGCGAACCAACTTCCAGTTCAATCCGAACGATCAACAGTCATCTTCTTCCTCCTCCTCCTCCAAGCTTCTCTCCGCCGCGCTGATTGCGAAATTACACAAATGCCATTTGGCCTCACTCCAAATTGCCAAAAAACACGTCCAGAAACAACACCTAGGATTCGACCCCAACTACGCCGCATACGGCGGCCCTCCGCCGAGCATTGCCGGAACCTCCAGCGGCGGGTGGCTGCCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGAGCAATAATATCAATAACAACAACATTCATCATCAGCAATGCCTTCAGCCTCTTGAAGATGATCATATCGAACAAATGATACAAGAGCTGCTACACCTCGGATCTTTCGAAATTGTTACATAA 570 52.63 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGRKARTNFQFNPNDQQSSSSSSSSKLLSAALIAKLHKCHLASLQIAKKHVQKQHLGFDPNYAAYGGPPPSIAGTSSGGWLPEETWVYSDEAQMESNNINNNNIHHQQCLQPLEDDHIEQMIQELLHLGSFEIVT 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47149230 47150132 + Maker00014197 Lcy3g2003 629195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2003 189 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2003 189 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2003 189 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2003 189 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2003 189 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2003 189 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2003 189 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Lcy3g2003 189 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy3g2003 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 121 IPR050913 -
Lcy3g2003 189 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1816 Lcy-Chr13:37121738 Lcy3g2003 Lcy-Chr3:47149230 3.76E-50 dispersed
Lcy13g1817 Lcy-Chr13:37127558 Lcy3g2003 Lcy-Chr3:47149230 4.72E-52 dispersed
Lcy3g2003 Lcy-Chr3:47149230 Lcy9g1874 Lcy-Chr9:43776258 6.65E-35 dispersed
Lcy3g2003 Lcy-Chr3:47149230 Lcy3g2007 Lcy-Chr3:47180956 1.00E-19 proximal
Lcy12g0538 Lcy-Chr12:6576075 Lcy3g2003 Lcy-Chr3:47149230 1.52E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19891 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2003 - - - 0.0