Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2047 ATGGAAGGTACTTCGCTTCACGGAACGCTTCACGCCACAATCTATGAAGTCGACAGGCTGCATGCTGGTGGTGAATCCAACGTCTTCAGCAAGTTAATGCAAAACATTGAGGAGGCTGTTGGAATTGGCAAAGGAGTAACCAAACTATATGCAACTATAGATTTAGAAAAGGCTAGAGTTGGGAGGACACGCATATTGGAAAATGAACCCAATAACCCAAGATGGTATGAATCTTTTCACATCTACTGTGCTCATAGGGCATCAAATGTTATCTTCACCGTGAAGGATGATAATCCCATTGGTGCAAGTTTGATTGGACGTGCATATGTACCTGTGGAAGACCTCATAGATGGGGAGATCGTCGACAAGTGGGTTCCAATCTTGGATGAAGAAAAAAATCCAATTGAAGGAGAATCTAAGATTCATGTCAAGCTTCAATACTTCAGTGTTACTAAAGATCGCAATTGGGGTCGTGGTATAAGAAGTCGTAAGTTTCCTGGAGTCCCCTACACATATTACTCACAGAGACAAGGTTGTAAGGTCTCTTTGTATCAAGATGCTCATATCCCTGATAATTTTATTCCTAAAATACCTCTTGCTGGAGGAAAGAAATATGCTCCCGCCAGATGTTGGGAAGATATTTTTGATGCCATACAAAACGCAAAACATCTGATCTACATCACAGGATGGTCTGTTTATACAGAAATTGCCTTGGTAAGGGACTCAAGGAGGCCAAAGCCCGGAGGAGACTCCATGCTTGGTGAGCTGCTTAAGAAGAAAGCAAGTGAAGGCGTCAGAGTTCTTATGCTTGTCTGGGATGACAGAACATCAGTTGGTTTGCTAAAAAAGGATGGTCTGATGGCTACTCATGATGAAGAAACTGAACATTACTTTCAAGATACTGATGTGCACTGTGTCTTGTGCCCTCGTAATCCTGACGATGGTGGAAGCATTGTTCAAGATCTACAAATCTCTACCATGTTCACTCATCATCAGAAGATTGTTGTGGTCGATAGCCCAATGCCAAGTGGAGATTCGGATAAGAGGAGAATTGTGAGTTTCGTTGGTGGCCTTGATCTCTGTGATGGCAGGTATGACACACCCTTTCATTCCCTTTTCCGGACATTGGATACTGCACATCACGACGATTTCCATCAACCAAATTTTCCTGGTGCATTAATAACAAAAGGTGGACCAAGGGAACCTTGGCACGACATCCATTCCCGACTTGAAGGGCCCATTGCCTGGGATGTCTTATTCAATTTTGAGCAAAGGTGGAAGAAACAAGGCGGGAAGGATATACTTGTCCAGCTTCGAGAGCTTGATGAAATAATTATTCCTCCATCTCCTGTTATGTACCCAGATGACCATGATTCATGGAATGTTCAATTGTTTAGATCAATAGATGGTGGGGCAGCTTTTGGCTTTCCTGAGACCCCTGAAGATGCTGCTAAGGCTGGGCTAGTCAGTGGGAAAGATAACATCATTGATCGAAGTATTCAAGATGCTTACATTAATGCTATTCGGCGGGCTAAGAATTTTATTTATATTGAAAACCAATATTTCCTTGGAAGTTGTTTTGGATGGTCTCCTGATGATATCAAGCCTGAGGATATCGGTGCCTTGCATTGTATCCCAAGAGAGCTTTCCCTTAAGATCGTTAGTAAGATTGCAGCAGGGGAAAGGTTCACTGTCTATGTAGTTGTTCCAATGTGGCCAGAAGGAATACCAGAAAGTGGATCCGTTCAGGCAATATTAGATTGGCAGAGGAGGACATTTGAAATGATGTATAAAGACGTCATTGAGGCTCTTAGAGATCAAGGCATCGAGGAAGACCCTCGTAACTACTTGACATTCTTCTGTCTTGGCAACCGGGAAGTCAAGAGGTCTGGAGAATATCAACCTCCAGAAGCACCAGAGGATGATTCTGATTATTTGAGAGCCCAGCAGGCCAGGCGTTTCATGATTTATGTTCACACCAAGATGATGATTGTTGATGATGAGTACATAATCGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGTGCAAGGGACTCTGAGATAGCTATGGGCGCTTATCAGCCATATCATCTGTCAACTCATGAACCTGCCCGTGGTCAAGTTCATGGATTCCGTATGGCCCTCTGGTATGAACATCTTGGTATGCTTGATGAAACTTTCCTAAGGCCAGAAAGCGAAGAATGTGTTGCGAAGGTTAACAGAATTGCTGATAAATATTGGGATCTGTATTCGAGTGAAACACTTGAGAGGGACTTGCCCGGTCACCTTCTCCGCTATCCCATCGGCATATCCAGTGAAGGAAATGTCACAGAGCTCCCAGGATTTGAGTTCTTCCCCGACACCAAAGCTCGCATACTCGGAACCAAATCTGACTACCTCCCTCCCATCCTCACTACCTAG 2427 43.88 MEGTSLHGTLHATIYEVDRLHAGGESNVFSKLMQNIEEAVGIGKGVTKLYATIDLEKARVGRTRILENEPNNPRWYESFHIYCAHRASNVIFTVKDDNPIGASLIGRAYVPVEDLIDGEIVDKWVPILDEEKNPIEGESKIHVKLQYFSVTKDRNWGRGIRSRKFPGVPYTYYSQRQGCKVSLYQDAHIPDNFIPKIPLAGGKKYAPARCWEDIFDAIQNAKHLIYITGWSVYTEIALVRDSRRPKPGGDSMLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEHYFQDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSPMPSGDSDKRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGALITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDILVQLRELDEIIIPPSPVMYPDDHDSWNVQLFRSIDGGAAFGFPETPEDAAKAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDDIKPEDIGALHCIPRELSLKIVSKIAAGERFTVYVVVPMWPEGIPESGSVQAILDWQRRTFEMMYKDVIEALRDQGIEEDPRNYLTFFCLGNREVKRSGEYQPPEAPEDDSDYLRAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSTHEPARGQVHGFRMALWYEHLGMLDETFLRPESEECVAKVNRIADKYWDLYSSETLERDLPGHLLRYPIGISSEGNVTELPGFEFFPDTKARILGTKSDYLPPILTT 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47476746 47481201 - Maker00013673 Lcy3g2047 629239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2047 808 SMART pld_4 654 681 IPR001736 GO:0003824(InterPro)
Lcy3g2047 808 SMART pld_4 326 364 IPR001736 GO:0003824(InterPro)
Lcy3g2047 808 FunFam Phospholipase D 467 700 - -
Lcy3g2047 808 Gene3D C2 domain 7 157 IPR035892 -
Lcy3g2047 808 CDD C2_plant_PLD 6 148 - -
Lcy3g2047 808 SUPERFAMILY Phospholipase D/nuclease 151 442 - -
Lcy3g2047 808 PANTHER PHOSPHOLIPASE D 11 795 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy3g2047 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824(InterPro)
Lcy3g2047 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Lcy3g2047 808 Gene3D Endonuclease Chain A 477 699 - -
Lcy3g2047 808 Pfam Phospholipase D C terminal 726 798 IPR024632 -
Lcy3g2047 808 Pfam C2 domain 44 126 IPR000008 -
Lcy3g2047 808 CDD PLDc_pPLDalpha_2 492 701 - -
Lcy3g2047 808 Pfam Phospholipase D Active site motif 656 681 IPR001736 GO:0003824(InterPro)
Lcy3g2047 808 Pfam Phospholipase D Active site motif 327 364 IPR001736 GO:0003824(InterPro)
Lcy3g2047 808 SUPERFAMILY Phospholipase D/nuclease 449 738 - -
Lcy3g2047 808 CDD PLDc_pPLDalpha_1 201 378 - -
Lcy3g2047 808 FunFam Phospholipase D delta 201 444 - -
Lcy3g2047 808 Gene3D Endonuclease Chain A 200 442 - -
Lcy3g2047 808 SMART C2_3c 31 124 IPR000008 -
Lcy3g2047 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824(InterPro)
Lcy3g2047 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Lcy3g2047 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0160 Lcy-Chr13:1637034 Lcy3g2047 Lcy-Chr3:47476746 5.40E-204 dispersed
Lcy3g2047 Lcy-Chr3:47476746 Lcy6g1997 Lcy-Chr6:42548569 4.89E-245 dispersed
Lcy12g0595 Lcy-Chr12:7336357 Lcy3g2047 Lcy-Chr3:47476746 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2047 K01115 - csv:101206113 1588.55