Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2052 ATGACATATTTTCCTAGTTTAAGCAATCAAAGAGACTCCATGTTAGGTGACCAGAAACTTGGTTCTTCTTGTCAAGAACAGCCTCTCTGTTCTGGGAATTTGATGATGTTTATGAATCATCAAGACTCTTCTTGCAGAGATTATTCTGAGATTTTTTCTGGGGTTTCTTCAAACTATGTTGAAACTGTGGGAGATAGAAGTAATGGTGAAATGGCTTTCATTCCACCAGTTGTGGGAATTTTAGATGACTCAAATTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCACCCTCTGTTGTTTCATTGCCTTCATTTCCTCCCCAATATCAGACCCCTGCCATGGCTTCTTCATTCATCAATGCACCTCCTTCGATCTTCGAGAAGAGGCCGAATCCTTGTATGTCTGATGCGAAAAATGGCATGTACATGGGAGTAGGTATTGCAAACTCGACATTGAATTCGGTATACATCGAAGCTGCACAGCATTTGCTCGACGAAATGGTTAGCGTCCGGGAAGCTTTGAAGGAGCTAAAGTCTAAGAAACTGAAAGGTTCCAATGGTTTGGGTGTTGATAGCTGCAGAGAAAATGATAGGGGATCTAATGATCTGACTGGGGAGATGTGTTCCGATGCGAGGGAGTCGTCGATCGCCAATCCGTCTAGTGATCTATCGCCTACCGAACGACAGGACTTGAAGAACAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACCAACAGCTGCAGTTTCTGGCATCGTCTTTCGACATGGTAGCAGGCCGTGGGGCTGCAGAGTTCTACACTGCACTTGCACACCGGACTATTTCGTGCCACTTTCGTCGTTTGCGCGACGCAATCAATGCACAGATTGAGGTCACCAGGAGAGCCTTGGGGGAGCAAGATGCTTCACATTCTGGTCAAGAGGGCATTCCCCGTCTCCGCTTTGTCGATCAGCAGCTCAGGCAGCAGAGGGCCCTTCAGCAGCTCGGCGTCACGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCAGAAAGCTCGGTGTCGATTCTTCGTGCGTGGCTGTTCGAACACTTCCTCCATCCATATCCTAAGGATTCAGAGAAACTTAAGCTAGCAAGACAAACTGGCCTGACCAGAAACCAAGTTGCAAACTGGTTTATAAATGCGCGTGTTCGGCTATGGAAACCGATGGTCGAGGAGATGTACAAAGAAGAATTCGGAGACTCCAACATGGACATCAAATCCTCACCAGAAAATGCATCCAAAGCATCATGGAACAATTCACTATTCTCCGAAGACAGGGGAGGAGACGAGTTGCACGACAGCATGAAATCTGCAGCAAATAACGGCGAGCGAGTCCTCTACCGCCCGTGTTCTACCGACGACATGATCAAGTCGAGTAACTTCTCGATCGGCGGAGACGTTTCACTTGCACTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGCATGTTTGGGAGTAACAACAGAATGGTGGTTGGTTCTGTGGAGCTTGAGGCACAAGATTTTCCATGTTTGGAACCAGAGAGGCATCATCAATGCAGGCTCACAAGTTCAAATATGTTGCATGATTTTGTAGTTTGA 1638 46.64 MTYFPSLSNQRDSMLGDQKLGSSCQEQPLCSGNLMMFMNHQDSSCRDYSEIFSGVSSNYVETVGDRSNGEMAFIPPVVGILDDSNFQCQGVSLSLSTHSPSVVSLPSFPPQYQTPAMASSFINAPPSIFEKRPNPCMSDAKNGMYMGVGIANSTLNSVYIEAAQHLLDEMVSVREALKELKSKKLKGSNGLGVDSCRENDRGSNDLTGEMCSDARESSIANPSSDLSPTERQDLKNKNSKLLSLLGEVDRRYKQYYQQLQFLASSFDMVAGRGAAEFYTALAHRTISCHFRRLRDAINAQIEVTRRALGEQDASHSGQEGIPRLRFVDQQLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNMDIKSSPENASKASWNNSLFSEDRGGDELHDSMKSAANNGERVLYRPCSTDDMIKSSNFSIGGDVSLALELKHCEGDEFGMFGSNNRMVVGSVELEAQDFPCLEPERHHQCRLTSSNMLHDFVV 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47502719 47506264 - Maker00014487 Lcy3g2052 629244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2052 545 MobiDBLite consensus disorder prediction 214 229 - -
Lcy3g2052 545 Pfam Associated with HOX 155 297 IPR006563 -
Lcy3g2052 545 SUPERFAMILY Homeodomain-like 348 415 IPR009057 -
Lcy3g2052 545 Coils Coil 163 183 - -
Lcy3g2052 545 SMART HOX_1 347 411 IPR001356 GO:0003677(InterPro)
Lcy3g2052 545 CDD homeodomain 347 408 IPR001356 GO:0003677(InterPro)
Lcy3g2052 545 Gene3D - 344 421 - -
Lcy3g2052 545 MobiDBLite consensus disorder prediction 1 20 - -
Lcy3g2052 545 MobiDBLite consensus disorder prediction 214 233 - -
Lcy3g2052 545 ProSiteProfiles 'Homeobox' domain profile. 344 407 IPR001356 GO:0003677(InterPro)
Lcy3g2052 545 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 113 437 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy3g2052 545 Pfam Homeobox KN domain 364 403 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy3g2052 545 SMART prehox3 148 299 IPR006563 -
Lcy3g2052 545 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2052 Lcy-Chr3:47502719 Lcy8g1151 Lcy-Chr8:37816424 1.91E-103 dispersed
Lcy3g2052 Lcy-Chr3:47502719 Lcy8g2020 Lcy-Chr8:46432224 1.70E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19894 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2052 - - - 0.0