Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2066 ATGGCGGCTAGCAATGAAATTGCCTTTGATTGCTTTGCTCTGCTTTTGCTTGTGGTGTTTTCAAACGCCCAATCCGACGTATTGTCACAAGGCCAAGAACTAACACCTGGGTCTTGGCTAGTTTCAGCCACAGGGAGTTTCTCCCTCGGGTTCTACAGTCCTAGCCTATTGAACAACAGTCACATAGCCATTTGGTACTACGAAGATTCACAGAATCCAGTGTGGATTGCCAATCGAGACTTTGCATTTCCCAGAAATTTTGGGACGCCCTGTCTCACAATCGATAGCAACGGCAGCTTGAAGATTGTCCCTAAAGAAAGAAATGGGCATGCCTATAATTTCTATCTCTTTCAACTTGAACAACCCACTAACACCAGCGCCATTCTTCTAGACAATGGCAACTTTGTTCTGGGTGTGTTGAATCCAGATGGGTCCATTAAGCAACAGCTATGGCAGAGCTTTGATCATCCAACAGACACTCTTCTTCCCGGGATGAAACTTGGGATCAACCACAAAACTGGATCCACTTGGTCTGTAACATCCCGAAGAGGCGATTATTCTGTTCTATCAGGATCTTTCACTCTCACAATGAATCCCAACAACACAAACCAGTTGCTGATATTGCTTAGAGGAGCCGTTTTCTGGACCAGTGGAAACTGGCAGGATGGCCGATTTGAATTCTCAGAAGAACTTTCCAGCAAACAAGGATTCGTTTTCAATCGAGTCTCAAATGAGAACGAGACCTTTTTCAGTTACTCAAAGGAGAATGAGAACAATGGATCGACTGAAGTTGGACCCCGGTTGAGCTTGGGCAACGATGGGAAATTGGTGGGAAGTAATTGGGATTTGAAAGTTGAATGTCCCTATTTTGAAAACGAGTTGTTTGAGGCTAAGGGTGTTTCCGAAGAAGGGTGTGTGGGGAAAAGGCAGCACAAAGTACCCGAGTGTCGAAATCCGCCAAAACAATTTTCGACTACACAGAGATTTGGTAACATGGAGGGAAATGGTTTGAAGTACAGAGAAAGTGAGAATCTGACGATTTATGATTGTGAAGAGATTTGCATTTCGAGCTGTGGTTGCATTGCCTTTAGTTCTACGAATGAAGAAGGCACTGGCTGTGAGATGTGGAGTGTGGGAGCAAGGTTTGTTCCTGTGGAGGGAGGCAAGCGGATTATTTGGTCCCTTCAGGAGACTAAAGGGAAAGCTATTAGAAAAATGAGGAGGAAGGATTCAGAGCAACAAAATTTTCTACAAGAAATGCGGTCCAAATCTAAAAGTTTTAACATCCTAAAAATGAAGAACAAGCAAAGAAGAGACATAAAGAACTTCGAATTGCAGTTTTTCACCTTTGAAAGTGTAGTTTCTGCGACAAACAATTTCGCTGACGATTGTAAACTCGGAGAGGGTGGTTTTGGACCGGTTTATAAGGGAAGTTTGGCTGATGGGCAAGAAGTTGCCATTAAAAGACTGTCAAAGAATTCTGGACAAGGACTAGAGGAGTTCAAGAATGAAGCAATGTTGATTGCCAAACTGCAGCACACTAATCTGGTTAGGCTTATTGGCTGCTGCATTTATAGAGAAGAGAGGTTATTGGTGTATGAGTACATGTCCAACAAAAGCCTTGACTCCTTCCTTTTTGATCCAAAAAGAAAGCTAATACTAGATTGGAACAAACGCCTGCACATAATTCAAGGGATAATTCAAGGATTGCTCTACCTTCACAACTACTCGAGACTACGAATAATTCATCGAGATTTAAAAGTTAGCAATATCTTGCTCGATGATGAGATGAATGCAAAAATATCAGATTTTGGCATGGCCAGAATCTTTAAGCCCACCGAGCAAGAAGCAAATACTAGTCACATTGGTGGTACATATGGATATATATCACCCGAATATGCAATGGGAGGTATCTTCTCAATAAAATCAGATGTTTACAGCTTTGGAGTGTTGTTATTAGAGATCATAACAGCTCGAAAAAACTATCACAATTATGATGTGGAACGACCTCTCAATCTCATAGGATATGCATGGGAATTGTGGATGGATGGCAGAGGAGAAGAATTGATTGATTCGACTTTGTGCAACTCTGATCAAAAACCAAAAGCTCTAAGATGCATCCATGTTAGTCTTCTATGTGTCCAACAAATAGCAGCAGATAGACCTACCATGCTTGATGTTTATTCCATGATTCATAATGATTCTACTCAACTTCCATTACCAAAACAGCCTCCATTTTTCATCACCCAGAACTCCGAATTGGAGGTGGTGACAGATGACAATGAGCTGAAATCGGAATCAGTGACAGAAATACATTCTTTGAATGATATGTCAGTCTCTGTGATGGTTGCTAGATGA 2358 41.77 MAASNEIAFDCFALLLLVVFSNAQSDVLSQGQELTPGSWLVSATGSFSLGFYSPSLLNNSHIAIWYYEDSQNPVWIANRDFAFPRNFGTPCLTIDSNGSLKIVPKERNGHAYNFYLFQLEQPTNTSAILLDNGNFVLGVLNPDGSIKQQLWQSFDHPTDTLLPGMKLGINHKTGSTWSVTSRRGDYSVLSGSFTLTMNPNNTNQLLILLRGAVFWTSGNWQDGRFEFSEELSSKQGFVFNRVSNENETFFSYSKENENNGSTEVGPRLSLGNDGKLVGSNWDLKVECPYFENELFEAKGVSEEGCVGKRQHKVPECRNPPKQFSTTQRFGNMEGNGLKYRESENLTIYDCEEICISSCGCIAFSSTNEEGTGCEMWSVGARFVPVEGGKRIIWSLQETKGKAIRKMRRKDSEQQNFLQEMRSKSKSFNILKMKNKQRRDIKNFELQFFTFESVVSATNNFADDCKLGEGGFGPVYKGSLADGQEVAIKRLSKNSGQGLEEFKNEAMLIAKLQHTNLVRLIGCCIYREERLLVYEYMSNKSLDSFLFDPKRKLILDWNKRLHIIQGIIQGLLYLHNYSRLRIIHRDLKVSNILLDDEMNAKISDFGMARIFKPTEQEANTSHIGGTYGYISPEYAMGGIFSIKSDVYSFGVLLLEIITARKNYHNYDVERPLNLIGYAWELWMDGRGEELIDSTLCNSDQKPKALRCIHVSLLCVQQIAADRPTMLDVYSMIHNDSTQLPLPKQPPFFITQNSELEVVTDDNELKSESVTEIHSLNDMSVSVMVAR 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47600755 47605239 + Maker00014344 Lcy3g2066 629258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2066 785 CDD B_lectin 34 157 IPR001480 -
Lcy3g2066 785 Pfam Protein tyrosine and serine/threonine kinase 464 671 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2066 785 ProSiteProfiles Protein kinase domain profile. 460 711 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2066 785 Pfam PAN-like domain 343 377 IPR003609 -
Lcy3g2066 785 SMART serkin_6 460 712 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2066 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2066 785 CDD STKc_IRAK 466 731 - -
Lcy3g2066 785 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 144 747 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy3g2066 785 ProSiteProfiles Bulb-type lectin domain profile. 25 150 IPR001480 -
Lcy3g2066 785 Gene3D - 18 155 IPR036426 -
Lcy3g2066 785 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 425 535 - -
Lcy3g2066 785 Gene3D Transferase(Phosphotransferase) domain 1 536 739 - -
Lcy3g2066 785 SMART blect_4 25 157 IPR001480 -
Lcy3g2066 785 Pfam D-mannose binding lectin 74 183 IPR001480 -
Lcy3g2066 785 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 536 741 - -
Lcy3g2066 785 SUPERFAMILY Protein kinase-like (PK-like) 444 761 IPR011009 -
Lcy3g2066 785 PIRSF SRK 285 430 IPR024171 GO:0004674(InterPro)
Lcy3g2066 785 PIRSF SRK 2 288 IPR024171 GO:0004674(InterPro)
Lcy3g2066 785 PIRSF SRK 389 785 IPR024171 GO:0004674(InterPro)
Lcy3g2066 785 Gene3D Phosphorylase Kinase; domain 1 431 535 - -
Lcy3g2066 785 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 180 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2066 Lcy-Chr3:47600755 Lcy3g2109 Lcy-Chr3:48088559 2.60E-289 dispersed
Lcy3g2108 Lcy-Chr3:48081279 Lcy3g2066 Lcy-Chr3:47600755 1.29E-42 dispersed
Lcy9g1248 Lcy-Chr9:37049189 Lcy3g2066 Lcy-Chr3:47600755 2.10E-64 dispersed
Lcy3g2066 Lcy-Chr3:47600755 Lcy5g1958 Lcy-Chr5:42435742 4.51E-147 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65806 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2066 - - - 0.0