Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2074 ATGCGTGACTCCTCAAGATCTTCAATCTGTTTGGGTTATAGGAGAATCATCAAGAAAGAATCGGTCAAAATGCTAGATATGAGAGCCATTGTTGAAGGGTTAAATTGCTTACCTTCGATCCGAGCTTCTCGGTCAGACCTCTCCATTCCAGGCATTATCGTCGAATCAGATGCCATTGGTGTGATTAAGCTGCTGAACGGCGAAGAGGAATACCAGTCTGAGATCGCCTTCTTGGTTGAAGAAATCGAGCAGCTGAAGAAGTCTTATGCCAAGATTTCATTCTCCTACTGTCCGCGTTTGCGTAACAAGGAACCTAACTCTTTGGCGCGAAGGACTGTCGTTGATCACCAGTGTTCTTGCCATTCTTTTTTGGGTGTCTCTTCCAATTCAGAAGAGACCTTTTTCTCGGACACAGCTTTTGCCAGACGAAAGTTCCTCGCCGGCCGTTTTCCAGCTATGGAGGAGCCAATTTCCGATCGATCCACAGCAGCAAACCGGTGGTTCCGCCGCCTTCCGGCGACGCTCCGCCCGAAAACTTCCATCCTCGCAGAGATATCGGGTGCCGTCGGCGACCTCGGCACTTACATTCCCATCGTTCTCACTCTCACTCTGGTCTCCCATCTCGACCTCGGAACCACCCTAATCTTCACCGCTCTTTACAACATCGTCACCGGCCTCCTCTTCGGCATTCCGATGCCGGTTCAGCCGATGAAATCCATCGCCGCCGTCGCCGTCGCCGAGTCTACTCATCTCACTCTCCCTCAAATCGCCGCCGCCGGCCTCTCCACCGCCGCCGTCCTCCTAATCCTCGGCGCCACCGGCCTTATGTCCGTCCTCTACCGATACCTCCCGCTGCCGGTCGTCCGCGGTATCCAGCTCTCTCAGGGCCTCTCCTTCGCCTTCACCGCCATTAAATACATTCGGTACGATCAAGATTTGGTCACCTCTAAGTCCGGTGGACCTCGGTCCTGGCTTGGATTGGACGGCCTGATCGTTACCCTAGTTTCTTGTTTATTTCTAATTCTGACCACCGGAGCCGGCGATTCTCCTAATCGAGAACCGTCGTCTTCCGAACCACTTAACGGTTCTGAATCTCGTTCTGGCCGTCGCGTCAGAAGGTTACAAATCTTATCTATGATTCCTGCTGCTCTGATTGTGTTTTTGTTTGGATTATTGATCTGTTTCCTTCGCGATCTTTCCGTTTTGGAGAACCTTAAATTCGGCCCTTCGAAATTGCACGTTCTGAGAATCACATGGGAAGATTGGAAAATAGGGTTCGTACGAGCTGCAATTCCCCAAATTCCTCTTTCGATTTTGAACTCGGTGATTGCAGTTTGCAAATTATCCGCCGATTTGTTCCCAGATCGTGAAGCCTCCGCCATGTCTGTGTCTGTGAGTGTGGGGATCATGAACTTCGTCGGGTGCTGGTTCGGCGCAATGCCGGTGTGCCACGGCGCCGGCGGGCTCGCCGGGCAGTACCGGTTCGGTGGGAGAAGTGGCGCATCGGTGGTGTTTTTAGGGATTGGGAAACTGGTTTTGGGATTGGGGTTTGGGAATTCATTTGCGCAGGTTTTGAGTCAGTTCCCGATCGGAGTTCTTGGAGTTCTTCTGCTATTTGCTGGGATTGAACTGGCGATGGCTTCCAGAGATATGAATAGTAAAGAAGAATCATTTGTAATGTTGGTTTGTGCTGCTGTTTCACTGACAGGGTCTAGTGCTGCTTTGGGCTTTGGAGTTGGGATTTTGCTGTTTCTGCTTCTGAAACTGAGAGAATTTGAGTGTTCTTCTTCTGGTTTTGGGTTTCAGAAAATGAAGCCCAAATCTGATGATGAAGAAGAAACCCAGTTGTTAGCTTGA 1857 50.67 MRDSSRSSICLGYRRIIKKESVKMLDMRAIVEGLNCLPSIRASRSDLSIPGIIVESDAIGVIKLLNGEEEYQSEIAFLVEEIEQLKKSYAKISFSYCPRLRNKEPNSLARRTVVDHQCSCHSFLGVSSNSEETFFSDTAFARRKFLAGRFPAMEEPISDRSTAANRWFRRLPATLRPKTSILAEISGAVGDLGTYIPIVLTLTLVSHLDLGTTLIFTALYNIVTGLLFGIPMPVQPMKSIAAVAVAESTHLTLPQIAAAGLSTAAVLLILGATGLMSVLYRYLPLPVVRGIQLSQGLSFAFTAIKYIRYDQDLVTSKSGGPRSWLGLDGLIVTLVSCLFLILTTGAGDSPNREPSSSEPLNGSESRSGRRVRRLQILSMIPAALIVFLFGLLICFLRDLSVLENLKFGPSKLHVLRITWEDWKIGFVRAAIPQIPLSILNSVIAVCKLSADLFPDREASAMSVSVSVGIMNFVGCWFGAMPVCHGAGGLAGQYRFGGRSGASVVFLGIGKLVLGLGFGNSFAQVLSQFPIGVLGVLLLFAGIELAMASRDMNSKEESFVMLVCAAVSLTGSSAALGFGVGILLFLLLKLREFECSSSGFGFQKMKPKSDDEEETQLLA 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47666869 47668973 + Maker00015162 Lcy3g2074 629266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2074 618 Coils Coil 68 88 - -
Lcy3g2074 618 Pfam Molybdate transporter of MFS superfamily 183 299 IPR031563 GO:0015098(InterPro)|GO:0015689(InterPro)
Lcy3g2074 618 Pfam Molybdate transporter of MFS superfamily 426 544 IPR031563 GO:0015098(InterPro)|GO:0015689(InterPro)
Lcy3g2074 618 MobiDBLite consensus disorder prediction 347 366 - -
Lcy3g2074 618 Pfam Reverse transcriptase-like 9 111 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lcy3g2074 618 PANTHER - 162 594 IPR031563 GO:0015098(InterPro)|GO:0015689(InterPro)
Lcy3g2074 618 CDD RNase_H_like 2 110 IPR044730 -
Lcy3g2074 618 Gene3D - 1 119 IPR036397 GO:0003676(InterPro)
Lcy3g2074 618 MobiDBLite consensus disorder prediction 348 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1319 Lcy-Chr13:30835836 Lcy3g2074 Lcy-Chr3:47666869 1.41E-157 dispersed
Lcy3g2074 Lcy-Chr3:47666869 Lcy10g1372 Lcy-Chr10:36941031 1.36E-31 dispersed
Lcy6g0336 Lcy-Chr6:3127633 Lcy3g2074 Lcy-Chr3:47666869 1.87E-06 dispersed
Lcy3g2074 Lcy-Chr3:47666869 Lcy7g1766 Lcy-Chr7:37433831 2.46E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2074 - - - 0.0