Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2089 ATGGAGATCAAAGAAAAGAAGAGACTTTCAAGTATCTCCTCTCCATTAATGTCATCTTCTTTGATGGCTTTCCTCCTGGTTTTTCTCTGTTTCCTCTTCTATGGCCCCAACGCCGCGTTTGCGGCCGGGACAAGCGCTTCCTTCATTCCCAAAGATAATTTTCTCATTGACTGTGGTGCCAACAAGGAAATTGGTGCACTCCCAGATGGAAGAGTGTTCAAAACTGATGAGCAATCCAAGCAGTTCCTGGAGGCCAAAGATGATATCATAGCCGCCGCCCCACAGGAGACCAAGGCACCATCCCCGGTCGACTTAACGGCGAGAATCTTCCTCCAAGAAGCTACTTACAATTTTCAGTTGGCTGAGCCAGGATGGCATTGGCTCCGCCTCCATTTCCTGCCTATGAAAACCAAGGACTTTGATCTCCTGCAGGCCAAATTTTCAGTAACCACTGAAAAGTATGTCTTGCTTCACAGCTTCAACATCAACAATGAATCCACATTTGTTCTCAAGGAGTTTCTGCTTAATATCACTGAACCAAAACTCTCAATCAAGTTCTTCCCAATGAAGAATTCGGCTGCTTTCATCAATGCCATCGAGGTCGTCTCCGCTCCGGTCGACTTGATCGCCGACTCCAACGTGGAGCTCTCTCCGGTCGGGACGATCGAGGGTCTGACCAAATATGCATTTCAGACATTGTATAGGTTGAACATGGGAGGACCTATAATCACTTCAAAAAATGACACTCTTGGAAGGACATGGGACAATGATGAAGTTTACAGGACACCTAAAGCTGCTGGTAGGAATGTGGTTGTTGAAACCAATAGCATCAAATACCAAGGGGGCTTGAAAGAAACAGGCATGTTAATTGCTCCTCCAAGTGTTTATGCAAGTGCAGTTCAAATGGGAGATGTTCAAGTCAATGTACCAAATTTCAATATCACTTGGAAATTTGAGGCGGAACCCTCATTTAGCTACCTAATTCGCTTTCATTTCTGTGACATTGTCAGCAAAGTACTCAATAATCTCTATTTCAATGTTTATGTAAATGGGAAGGCTGCCATAAGCAACTTGGATTTGTCACACAAGCTAGGAAGCTTGGCAACTGCATACTACAAGGATGTTGTGGTTAATGCTTCCTTGATTGTAGAAGGAATGACAATTCAAATCAGTCCGGCTAACGTCGAAACCGGAGATGCGAATGCCATTCTAAATGGCTTAGAGGTATTGAAAATAAGCAACTCTGTTAATAGTCTGGATGGAGAGTTTGGACTGGATGGTAAGTCTGCAAATGGTTCTAACCGTGGCACGGTTGCTGCCGTCGGGTTCGCCATGATGTTCGGGGCGTTTGTTGGGCTCGGCGCCATGGTGATGAAATGGCACAAAAGGCCTCAAGATTGGCAGAAGAGGAACAGTTTCTCTTCCTGGTTGCTTCCTGTACATGCTGGTGATTCAAGCTTTATGACAAGCAAGACCTCATATGGTTCACACAAGACCAACATTTACTCCTCTACTTTAGGCCTTGGAAGGTTCTTCACTTTAGCAGAGCTGCAAGAAGCCACCAAGAACTTTGATTCCAATTCAATCATTGGTGTTGGTGGGTTTGGAAATGTGTACCTTGGAGTGATTGATGAAGGGACCAAGGTTGCAGTTAAGAGAGGAAATCCTCAATCTGAACAAGGCATAACAGAATTCCAAACAGAAATTCAGATGCTTTCCAAACTCAGACACAGGCATTTGGTTTCTCTGATTGGATACTGTGATGAAAACTCTGAAATGATCTTGGTATATGAGTTCATGTCAAATGGTCCATTCAGAGATCACTTGTATGGAAAGGACTTGCCTCCATTGTCATGGAAGCAAAGGCTAGAGATCTGTATCGGAGCGGCTCGAGGTCTTCATTACCTACACACAGGAACAGCACAGGGAATCATTCACCGTGATGTCAAAACGACCAACATTTTGCTCGACGAGAACTTCACCGCAAAAGTCGCTGATTTCGGGCTGTCTAAGGATGCTCCAATGGGGCAGGGACATGTCAGTACAGCAGTGAAGGGAAGTTTTGGATATTTGGATCCAGAGTACTTTAGAAGGCAACAGTTGACAGAAAAATCAGATGTTTATTCCTTTGGAGTTGTTCTGCTTGAGGCATTGTGTGTAAGGCCAGCAATCAACCCATCTTTGACAAGGGAACAAGTGAACTTGGCTGATTGGGCAATGCAGAATAAGAGAAAAGGGTGTTTGGAAAAGATAATGGATCCTCTTCTAGTTGGAGCCATAAATCCTGAGTCCATGAAGAAGTTTGCAGAGGCAGCAGAGAAATGTCTTGCTGAACATGGTGTTGATAGGCCAAGCATGGGGGATGTGCTCTGGAATTTGGAGTATGCATTGCAACTTCAGGAAGCATTCTCACAAGGCAAGACTGAAGATGAAAGCAAAGCTGCAGGCACGGAATCTGTCGCCCCCGCTACCGCTGTCGACACTCCGACAAGTGCACCGAACTCCGACAACCGCCCTGTCGTGCAGCCAGAACAGAATAGGCAACCGGCGGAGGTCCAAACCATTGATGATCACTCAGGTAGTGCAATGTTCGCTCATTTTTCTAATCTCAACGGTAGATGA 2622 45.27 MEIKEKKRLSSISSPLMSSSLMAFLLVFLCFLFYGPNAAFAAGTSASFIPKDNFLIDCGANKEIGALPDGRVFKTDEQSKQFLEAKDDIIAAAPQETKAPSPVDLTARIFLQEATYNFQLAEPGWHWLRLHFLPMKTKDFDLLQAKFSVTTEKYVLLHSFNINNESTFVLKEFLLNITEPKLSIKFFPMKNSAAFINAIEVVSAPVDLIADSNVELSPVGTIEGLTKYAFQTLYRLNMGGPIITSKNDTLGRTWDNDEVYRTPKAAGRNVVVETNSIKYQGGLKETGMLIAPPSVYASAVQMGDVQVNVPNFNITWKFEAEPSFSYLIRFHFCDIVSKVLNNLYFNVYVNGKAAISNLDLSHKLGSLATAYYKDVVVNASLIVEGMTIQISPANVETGDANAILNGLEVLKISNSVNSLDGEFGLDGKSANGSNRGTVAAVGFAMMFGAFVGLGAMVMKWHKRPQDWQKRNSFSSWLLPVHAGDSSFMTSKTSYGSHKTNIYSSTLGLGRFFTLAELQEATKNFDSNSIIGVGGFGNVYLGVIDEGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGKDLPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVADFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCVRPAINPSLTREQVNLADWAMQNKRKGCLEKIMDPLLVGAINPESMKKFAEAAEKCLAEHGVDRPSMGDVLWNLEYALQLQEAFSQGKTEDESKAAGTESVAPATAVDTPTSAPNSDNRPVVQPEQNRQPAEVQTIDDHSGSAMFAHFSNLNGR 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47850450 47853071 - Maker00014617 Lcy3g2089 629281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2089 873 SUPERFAMILY Protein kinase-like (PK-like) 508 791 IPR011009 -
Lcy3g2089 873 FunFam receptor-like protein kinase FERONIA 488 599 - -
Lcy3g2089 873 Gene3D - 53 207 - -
Lcy3g2089 873 Gene3D - 228 414 - -
Lcy3g2089 873 FunFam Receptor-like protein kinase FERONIA 229 414 - -
Lcy3g2089 873 CDD STKc_IRAK 530 794 - -
Lcy3g2089 873 PANTHER OS07G0166700 PROTEIN 512 801 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Lcy3g2089 873 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524(InterPro)
Lcy3g2089 873 FunFam Putative receptor-like protein kinase 53 205 - -
Lcy3g2089 873 MobiDBLite consensus disorder prediction 823 855 - -
Lcy3g2089 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2089 873 Pfam Protein tyrosine and serine/threonine kinase 528 731 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2089 873 SMART serkin_6 524 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2089 873 Pfam Malectin-like domain 56 411 IPR024788 -
Lcy3g2089 873 FunFam Receptor-like protein kinase FERONIA 600 814 - -
Lcy3g2089 873 Gene3D Transferase(Phosphotransferase) domain 1 600 820 - -
Lcy3g2089 873 Gene3D Phosphorylase Kinase; domain 1 485 599 - -
Lcy3g2089 873 MobiDBLite consensus disorder prediction 806 860 - -
Lcy3g2089 873 ProSiteProfiles Protein kinase domain profile. 524 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2089 Lcy-Chr3:47850450 Lcy9g1271 Lcy-Chr9:37310086 3.81E-279 dispersed
Lcy7g0261 Lcy-Chr7:2249195 Lcy3g2089 Lcy-Chr3:47850450 1.68E-43 dispersed
Lcy2g0554 Lcy-Chr2:4756934 Lcy3g2089 Lcy-Chr3:47850450 2.46e-313 transposed
Lcy3g2089 Lcy-Chr3:47850450 Lcy8g1810 Lcy-Chr8:44496558 2.37E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65807 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2089 - - - 0.0