Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2098 ATGCGAGCCAATTCCAATCGAGTTGAGAGCCTGGAATGTCATGAAACGGTGTTGACAATTCCGCCGGAGGCAATGCCGGCGCCGCCGCAAGAGACGGAGGAGATTCACAAGGTCTGCTTGCCGCCGAAGCAGACAACACTTCAGAAACTCAAGCACAAGCTATCGGAGGTGTTCTTCCCCGATGACCCCCTTCACAGATTCAAGAACCAAACGTGGTTAACAAAAGTGCTTTTGGGCCTTCAATTACTGTTCCCTGTTTTCCAGTGGGGCCCTGATTATTCCCTCGCTCTTTTCAAGTCTGACATCGTTTCTGGTCTTACAATTGCTAGCCTTGCTATTCCCCAGGGAATAAGTTATGCGAAACTTGCAAATTTGCCTCCCATCATCGGATTATATTCAAGTTTTGTGCCTCCACTGATATATTCCATCCTTGGAAGCTCTAGACATCTTGCTGTTGGCCCAGTTTCAATTGCCTCTTTGGTTATGGGATCGATGATCACTGAGGCAGTCTCTTATAACGAACAGCCAACTCTGTATCTTAAGTTAGCTTTTACTGCTACCTTCTTTGCTGGTGTATTCCAAGCATCTTTAGGTTTGTTAAGGTTAGGCTTTGTGATTGATTTTCTGTCAAAGGCTACTTTAGTTGGCTTTATGGCTGGTGCAGCAGTAATTGTGTCATTGCAACAACTCAAAGGGTTGCTTGGAATTACCCATTTCACCTCCAAAATGCAATTTATTCCTGTCATGTCTTCTGTCTTTCACCACAAAGATGAGAGCATCAAGAAACCAAAGCTTTTCTGGATTTCAGCAGCTGCTCCACTGACATCAGTTATTTTGTCCACTCTTTTAGTCTTCCTTCTCAGAACAAAAGTTCCTGGAATCTCAGTGATTGGTCATTTGCCAGAGGGTGTCAATCCTCCATCTATGAACATGCTGTACTTTACGGGTCCTCAATTGGCACTTGTCATTAAAACTGGCATTATAACTGGAATTCTCTCGCTCACTGAAGGAATTGCCGTAGGAAGGACGTTTGCTGGTTTGAAAAACTATCAAGTGGATGGGAATAAAGAAATGATGGCTATTGGTTTTATGAACATTGCTGGATCTTGTTCTTCATGCTATGTCACTACAGGATCATTTTCTCGGTCTGCTGTGAATTATAATGCCGGGGCACAAACAGCAGTTTCAAATGTAGTGATGTCAGCAACTGTGCTCATAACGTTGTTGTTTCTGATGCCCTTGTTCCATTATACTCCAAATTTCATCCTAGCAGCGATCATTATAACAGCAGTAATTGGGCTAATTGATTACCAAGCAGCCTGTAGGTTGTGGAAAGTTGACAAGCTTGATTTTGTAGCTTGTGTTTGTTCTTTCTTTGGCGTTCTTTTCATATCGGTTCCATTGGGTCTAGCCATTGCAGTTGGAGTCTCTGTTTTCAAGATTCTTTTGCATGTCACCAGGCCAAACACCATGGTTTTGGGGAATATTTCTGGGACTCAAATATTCCAAAACCTTGACCGATACCGAGACGCCTCAAGGGTGCCTTCATTCCTCATTCTTGCCATTGAATCTCCAATCTACTTTGCAAACTCAACATACCTACAAGAAAGGGTTCTAAGGTGGGTTAGGGAAGATGAAGAGCGGATAAAAGAGACTAATGACAGCCCACTGAAATGTGTAATCCTAGACATGACAGCTGTGACATCCATAGACACAAGTGGTATAGAAACAGTATGTGAAATTAGGAAGATGTTGATGCAAAAATCACTGCAGTTTGTGCTTGCAAATCCTGGTGGAAACGTGATGGAAAAACTGTATAAATCAAAGGCCTTGGAGCCGTTCGAGTTTAACGGTCTATACCTCTCCGTTGGAGAAGCTGTGAAGGACATTTCTTCTTTATGGAAGAGGCAGCCATAA 1917 43.09 MRANSNRVESLECHETVLTIPPEAMPAPPQETEEIHKVCLPPKQTTLQKLKHKLSEVFFPDDPLHRFKNQTWLTKVLLGLQLLFPVFQWGPDYSLALFKSDIVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSILGSSRHLAVGPVSIASLVMGSMITEAVSYNEQPTLYLKLAFTATFFAGVFQASLGLLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGITHFTSKMQFIPVMSSVFHHKDESIKKPKLFWISAAAPLTSVILSTLLVFLLRTKVPGISVIGHLPEGVNPPSMNMLYFTGPQLALVIKTGIITGILSLTEGIAVGRTFAGLKNYQVDGNKEMMAIGFMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNVVMSATVLITLLFLMPLFHYTPNFILAAIIITAVIGLIDYQAACRLWKVDKLDFVACVCSFFGVLFISVPLGLAIAVGVSVFKILLHVTRPNTMVLGNISGTQIFQNLDRYRDASRVPSFLILAIESPIYFANSTYLQERVLRWVREDEERIKETNDSPLKCVILDMTAVTSIDTSGIETVCEIRKMLMQKSLQFVLANPGGNVMEKLYKSKALEPFEFNGLYLSVGEAVKDISSLWKRQP 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48012647 48016823 + Maker00014367 Lcy3g2098 629290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2098 638 SUPERFAMILY SpoIIaa-like 512 628 IPR036513 -
Lcy3g2098 638 PANTHER SULFATE TRANSPORTER 74 629 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy3g2098 638 FunFam Sulfate transporter 31 487 632 - -
Lcy3g2098 638 CDD STAS_SulP_like_sulfate_transporter 508 623 - -
Lcy3g2098 638 Pfam Sulfate permease family 98 257 IPR011547 GO:0016020(InterPro)
Lcy3g2098 638 Pfam Sulfate permease family 261 455 IPR011547 GO:0016020(InterPro)
Lcy3g2098 638 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lcy3g2098 638 ProSiteProfiles STAS domain profile. 507 630 IPR002645 -
Lcy3g2098 638 Gene3D STAS domain 487 632 IPR036513 -
Lcy3g2098 638 Pfam STAS domain 510 626 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1576 Lcy-Chr11:39572673 Lcy3g2098 Lcy-Chr3:48012647 3.09E-233 dispersed
Lcy3g1580 Lcy-Chr3:42933186 Lcy3g2098 Lcy-Chr3:48012647 1.15E-254 dispersed
Lcy3g2098 Lcy-Chr3:48012647 Lcy4g0268 Lcy-Chr4:3241751 1.03E-206 dispersed
Lcy7g1317 Lcy-Chr7:18615616 Lcy3g2098 Lcy-Chr3:48012647 2.15E-269 transposed
Lcy2g0805 Lcy-Chr2:7221734 Lcy3g2098 Lcy-Chr3:48012647 5.62E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2098 K17471 - csv:101203079 1135.17