Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy3g2109 ATGAGAAATTTGGTAATGGCGAAGTGCTTTCTATGCTGCTACTGCTTTACAGTGCTGGTGCTGGCAGAGTTCTCCCATGGCCAGTCGACAGAGGCCAACGTACTGACACAAGGCCAAGAGTTAACAAGTGGGTCTCAGTTAATTTCAGCCACCGGCACCTTTGTGCTCGGGTTTTACAGTCCGACCAATTCCAGTTACATAGGAATCTCCTACAACACTGATGGCCAGAGTCCAGTGTGGATAGCCAACCGAAACACTCCATTTCCCAACGATTCTGGGTCGATCAGCCTCACGATCGACGGCAACGGCAGCTTGAAAATTGTGGGGAATGGGTATTCCTTTTCACTCTTTGATGTGGAAGAACCAACCAACAGCAGCGCCATTCTGCAGGACGACGGCAACTTCGTACTGCGTGAGCTCAACCCAGATGGGTCGTCAGTAAGGCGAGTGCTGTGGCAGAGCTTCGATCATCCAACAGACACTCTGCTTCCCGGGATGAAACTTGGGATCAATCACAAAACTGGATCCACTTGGTCTCTTACATCCTGGAGAAGCTACGGGTCTCCTAAATCAGGAACTTTCACTCTGGAAATGAATCCAAACAATACAAATCAGTTACTGATGTCGTACAGGGGAGCTCTGTTTTGGAGCAGCGGGAATTGGAAAGACGGTTCGTTCGAGTTCTTAGACAGCAACGATAAAGGAATCAATTTCAACCGAGTTTCGAATGAGGATGAAACGTACTTCATTTACTACGTCCCAAAATTTGATCAATCTCCTGACGTTGTACCCATCTGCCCGTACCCCTGCTATCGATATCCTAACTACGAACAACCAAGAAAGGTTCTACCCCAGTTGAGATTAGGAGATGGTGGCTATTTGGAGGTGAACAATCAGCATTCGAACTCCATTTGTGATCTCATCTTTGAAAATGAGGATTATTCATATTCTTACGGTATTTCAGAAGGAGGGTGCGTGTGGACAAAGCAGCGGAAAGCGCCTGAGTGTAGGAATTCGGCGTATATTCACTCGTCGTGGATGTCTGCTAACACGGAGGACAATAGCTCCAAGTACATAGGAAGTGAGAATCTAACGATGTTTGAATGCCAAAATATTTGCCTTTCTGATTGTGATTGCATCGCTGTTGCTTCTACGAACGATGATGGCAGCGGCTGTCAGATTTGGAAGTCTGGAGCCAAGTTTACTTCGGTCGACGGACGTCAACAGATTTGGTTTCTCGACACCAGTGTCGTCGACGAAGGAAAACGACTTGTTCATGCAAGAAAACAAAAGGTCTGGTTGAAAGTTACCATCAGTCTATCAGTAGTTGTATCTGTTCTTCTACTAGGTTTTATTTTCTACGTGAAATGGAGAAAACAAATATTCAAAGATGAATGTAAGCTCGGAAAAGGTGGTTTTGGACCTGTTTATAAGGGAATTTTGGCTGATGGCCAAGAAGTAGCCATTAAAAGATTGTCAAAGAATTCTGGACAAGGACTGGTGGAGTTCAAGAATGAAACTATTTTAATTGCCAAACTTCAACACACAAATCTGGTTAGGCTTATTGGTTGCTGCATTTATAAAGAAGAGAAGTTGTTGGTGTATGAGTACATGCCCAACAAAAGCCTTGACTTCTTCCTATTTGACTTGGAGAAGAAGTTAACACTTGATTGGGATAAACGCTTTCACATAATCCAAGGGATAGTCCAAGGACTACTCTACCTTCACTACTACTCAAGGATACGTATAATTCATCGAGATTTAAAAGTTAGCAACGTCTTACTCGATGAAGAGATGAACGCAAAAATATCAAATTTTGGTATGGCTAGAGTCTTTAAGCCATCAGAGCATGAAGTAAACACGAGCAAGGTTGTTGGTACATACTTTGGAATATTGTTACTGGAGATTATAACAAGTCAAAAGAACTATAACAATTATGATACGGAACGACCTCTCAATCTCGTAGGATATGCATGGGAATCGTGGGTGAATGGGAGAGGAGAAGAGCTGATTGATTTGACTTTGTGCAACTCTGCTCATAAACCAAAGGCTCTAAGGTGCATCCATGTGAATCTTTTGTGTGTTCAACAAATACCAGCAGACAGGCCTACAATGTTGGATGTTTATTTCATGATTAACCATGATTCTACTCAACTTCCATCACCCAAACAACCTGCATTTTTCGTTGCTCAAAACCCACAGTCCTCGAAAGTGATGGTGGTCGAGAGTGGACTCAGCCCAGAACCAGCAATACAGGAAATTGTTGGTTCATTAAGCATGCTCGTGCTGGCAGCGTTTGCCCATGGCCAGTGGACAGAGGCCAACGTATTGACACAAGGCCAAGAGTACTCTCGGGTACGTATAATTCATCGAGATTTAAAAGTTAGCAACATCTTACTCGATGAAGAGATGAATGCAAAAATACCGGATTTCAGTATAGCTAGAGTCTTTAAGCCATCAGAGCATGAAGTAAACACGAGCAAAGTTGTTGGTACATAG 2499 43.46 MRNLVMAKCFLCCYCFTVLVLAEFSHGQSTEANVLTQGQELTSGSQLISATGTFVLGFYSPTNSSYIGISYNTDGQSPVWIANRNTPFPNDSGSISLTIDGNGSLKIVGNGYSFSLFDVEEPTNSSAILQDDGNFVLRELNPDGSSVRRVLWQSFDHPTDTLLPGMKLGINHKTGSTWSLTSWRSYGSPKSGTFTLEMNPNNTNQLLMSYRGALFWSSGNWKDGSFEFLDSNDKGINFNRVSNEDETYFIYYVPKFDQSPDVVPICPYPCYRYPNYEQPRKVLPQLRLGDGGYLEVNNQHSNSICDLIFENEDYSYSYGISEGGCVWTKQRKAPECRNSAYIHSSWMSANTEDNSSKYIGSENLTMFECQNICLSDCDCIAVASTNDDGSGCQIWKSGAKFTSVDGRQQIWFLDTSVVDEGKRLVHARKQKVWLKVTISLSVVVSVLLLGFIFYVKWRKQIFKDECKLGKGGFGPVYKGILADGQEVAIKRLSKNSGQGLVEFKNETILIAKLQHTNLVRLIGCCIYKEEKLLVYEYMPNKSLDFFLFDLEKKLTLDWDKRFHIIQGIVQGLLYLHYYSRIRIIHRDLKVSNVLLDEEMNAKISNFGMARVFKPSEHEVNTSKVVGTYFGILLLEIITSQKNYNNYDTERPLNLVGYAWESWVNGRGEELIDLTLCNSAHKPKALRCIHVNLLCVQQIPADRPTMLDVYFMINHDSTQLPSPKQPAFFVAQNPQSSKVMVVESGLSPEPAIQEIVGSLSMLVLAAFAHGQWTEANVLTQGQEYSRVRIIHRDLKVSNILLDEEMNAKIPDFSIARVFKPSEHEVNTSKVVGT 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48088559 48096492 + Maker00014531 Lcy3g2109 629301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy3g2109 832 SMART serkin_6 462 688 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2109 832 Gene3D - 28 156 IPR036426 -
Lcy3g2109 832 FunFam Uncharacterized protein 474 537 - -
Lcy3g2109 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 187 IPR036426 -
Lcy3g2109 832 Pfam D-mannose binding lectin 79 184 IPR001480 -
Lcy3g2109 832 CDD B_lectin 41 158 IPR001480 -
Lcy3g2109 832 ProSiteProfiles Bulb-type lectin domain profile. 32 150 IPR001480 -
Lcy3g2109 832 SMART blect_4 32 158 IPR001480 -
Lcy3g2109 832 Gene3D Transferase(Phosphotransferase) domain 1 538 628 - -
Lcy3g2109 832 Gene3D Transferase(Phosphotransferase) domain 1 629 724 - -
Lcy3g2109 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy3g2109 832 ProSiteProfiles PAN/Apple domain profile. 336 417 IPR003609 -
Lcy3g2109 832 ProSiteProfiles Protein kinase domain profile. 462 717 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2109 832 SUPERFAMILY Protein kinase-like (PK-like) 785 832 IPR011009 -
Lcy3g2109 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 538 629 - -
Lcy3g2109 832 Pfam PAN-like domain 361 397 IPR003609 -
Lcy3g2109 832 Gene3D Transferase(Phosphotransferase) domain 1 761 832 - -
Lcy3g2109 832 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 725 - -
Lcy3g2109 832 PIRSF SRK 3 268 IPR024171 GO:0004674(InterPro)
Lcy3g2109 832 PIRSF SRK 781 832 IPR024171 GO:0004674(InterPro)
Lcy3g2109 832 PIRSF SRK 629 758 IPR024171 GO:0004674(InterPro)
Lcy3g2109 832 PIRSF SRK 289 466 IPR024171 GO:0004674(InterPro)
Lcy3g2109 832 PIRSF SRK 460 628 IPR024171 GO:0004674(InterPro)
Lcy3g2109 832 SUPERFAMILY Protein kinase-like (PK-like) 461 731 IPR011009 -
Lcy3g2109 832 Pfam Protein kinase domain 464 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2109 832 Pfam Protein kinase domain 787 832 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy3g2109 832 Gene3D Phosphorylase Kinase; domain 1 458 537 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2066 Lcy-Chr3:47600755 Lcy3g2109 Lcy-Chr3:48088559 2.60E-289 dispersed
Lcy3g2109 Lcy-Chr3:48088559 Lcy6g1267 Lcy-Chr6:15708705 1.19E-127 dispersed
Lcy3g2108 Lcy-Chr3:48081279 Lcy3g2109 Lcy-Chr3:48088559 2.48E-43 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65808 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy3g2109 - - - 0.0